Variant report

Variant	rs11857529
Chromosome Location	chr15:77956160-77956161
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77955147..77957967-chr15:77958627..77961256,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11072667	0.83[AMR][1000 genomes]
rs11853548	1.00[EUR][1000 genomes]
rs11853824	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11854532	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11855576	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12324340	1.00[EUR][1000 genomes]
rs2667765	1.00[EUR][1000 genomes]
rs28439897	1.00[EUR][1000 genomes]
rs28498563	1.00[EUR][1000 genomes]
rs28498879	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28557414	1.00[EUR][1000 genomes]
rs28634734	1.00[EUR][1000 genomes]
rs28635388	1.00[EUR][1000 genomes]
rs34611551	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56886206	0.83[AMR][1000 genomes]
rs57215429	1.00[EUR][1000 genomes]
rs57365401	1.00[EUR][1000 genomes]
rs57563532	0.83[AMR][1000 genomes]
rs57738968	1.00[EUR][1000 genomes]
rs58135467	0.83[AMR][1000 genomes]
rs58372659	1.00[EUR][1000 genomes]
rs58432220	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58490956	1.00[EUR][1000 genomes]
rs58723442	1.00[EUR][1000 genomes]
rs58745170	1.00[EUR][1000 genomes]
rs59232635	0.83[AMR][1000 genomes]
rs59320137	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60322323	1.00[EUR][1000 genomes]
rs60380768	1.00[EUR][1000 genomes]
rs60772286	1.00[EUR][1000 genomes]
rs6495243	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7181139	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73448973	1.00[EUR][1000 genomes]
rs73450724	1.00[EUR][1000 genomes]
rs73450959	1.00[EUR][1000 genomes]
rs74025393	1.00[EUR][1000 genomes]
rs8034919	0.85[AMR][1000 genomes]
rs8037835	1.00[EUR][1000 genomes]
rs8038325	1.00[EUR][1000 genomes]
rs907375	1.00[EUR][1000 genomes]
rs907394	1.00[EUR][1000 genomes]
rs907397	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77947000-77965200	Enhancers	Fetal Brain Male	brain
2	chr15:77949200-77956200	Enhancers	Fetal Brain Female	brain
3	chr15:77949400-77956800	Weak transcription	Spleen	Spleen
4	chr15:77951000-77957000	Enhancers	Fetal Intestine Small	intestine
5	chr15:77953800-77956600	Enhancers	Fetal Intestine Large	intestine
6	chr15:77954600-77957400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:77955000-77956800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:77955200-77956800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:77955200-77957000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr15:77955200-77957200	Enhancers	H1 Cell Line	embryonic stem cell
11	chr15:77955200-77957800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:77955400-77956600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:77955400-77956800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:77955600-77957000	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:77955600-77957200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr15:77955600-77957600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:77955600-77957800	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr15:77955800-77956400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr15:77955800-77956800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:77955800-77956800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr15:77955800-77957000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr15:77956000-77956400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:77956000-77956800	Enhancers	Brain Angular Gyrus	brain
24	chr15:77956000-77956800	Enhancers	Brain Cingulate Gyrus	brain
25	chr15:77956000-77956800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
26	chr15:77956000-77956800	Bivalent Enhancer	Fetal Stomach	stomach
27	chr15:77956000-77957000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr15:77956000-77957200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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