Variant report

Variant	rs73448973
Chromosome Location	chr15:77871828-77871829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77864365..77867025-chr15:77869640..77872108,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11853548	1.00[EUR][1000 genomes]
rs11853824	1.00[EUR][1000 genomes]
rs11854532	1.00[EUR][1000 genomes]
rs11855576	1.00[EUR][1000 genomes]
rs11857529	1.00[EUR][1000 genomes]
rs12324340	1.00[EUR][1000 genomes]
rs2667765	1.00[EUR][1000 genomes]
rs28439897	1.00[EUR][1000 genomes]
rs28498563	1.00[EUR][1000 genomes]
rs28498879	1.00[EUR][1000 genomes]
rs28557414	1.00[EUR][1000 genomes]
rs28634734	1.00[EUR][1000 genomes]
rs28635388	1.00[EUR][1000 genomes]
rs34611551	1.00[EUR][1000 genomes]
rs57215429	1.00[EUR][1000 genomes]
rs57365401	1.00[EUR][1000 genomes]
rs57738968	1.00[EUR][1000 genomes]
rs58372659	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58432220	1.00[EUR][1000 genomes]
rs58490956	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58723442	1.00[EUR][1000 genomes]
rs58745170	1.00[EUR][1000 genomes]
rs59320137	1.00[EUR][1000 genomes]
rs60309400	0.81[AMR][1000 genomes]
rs60322323	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60380768	1.00[EUR][1000 genomes]
rs60772286	1.00[EUR][1000 genomes]
rs6495243	1.00[EUR][1000 genomes]
rs7181139	1.00[EUR][1000 genomes]
rs7182984	1.00[EUR][1000 genomes]
rs73450717	0.81[AMR][1000 genomes]
rs73450724	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73450740	0.81[AMR][1000 genomes]
rs73450959	1.00[EUR][1000 genomes]
rs74025393	1.00[EUR][1000 genomes]
rs8037835	1.00[EUR][1000 genomes]
rs8038325	1.00[EUR][1000 genomes]
rs907375	1.00[EUR][1000 genomes]
rs907394	1.00[EUR][1000 genomes]
rs907397	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv904415	chr15:77845959-77943935	Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv904416	chr15:77845959-77967416	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv904417	chr15:77851535-77935992	Weak transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv904418	chr15:77851535-77963887	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77862200-77875000	Weak transcription	Left Ventricle	heart
2	chr15:77868400-77872000	Enhancers	Fetal Muscle Leg	muscle
3	chr15:77868400-77874400	Weak transcription	Fetal Intestine Small	intestine
4	chr15:77868400-77874600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:77868600-77874600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:77869000-77872000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:77870200-77873000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:77870200-77873600	Weak transcription	Fetal Brain Female	brain
9	chr15:77870200-77876600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:77870400-77873400	Weak transcription	Fetal Brain Male	brain
11	chr15:77870400-77876600	Weak transcription	Fetal Heart	heart
12	chr15:77870600-77873000	Weak transcription	Brain Angular Gyrus	brain
13	chr15:77870600-77875200	Weak transcription	Right Ventricle	heart
14	chr15:77871000-77872600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr15:77871000-77873600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr15:77871000-77874600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:77871200-77872000	Enhancers	Stomach Mucosa	stomach
18	chr15:77871200-77873000	Weak transcription	Brain Anterior Caudate	brain
19	chr15:77871200-77873000	Weak transcription	Brain Substantia Nigra	brain
20	chr15:77871400-77873000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:77871400-77873000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:77871400-77876600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:77871600-77873200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:77871600-77873200	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:77871600-77873400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr15:77871600-77873600	Weak transcription	HSMMtube	muscle
27	chr15:77871600-77874600	Weak transcription	Brain Germinal Matrix	brain
28	chr15:77871800-77872000	Bivalent Enhancer	Placenta	Placenta
29	chr15:77871800-77873000	Weak transcription	Brain Hippocampus Middle	brain

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