Variant report

Variant	rs28439897
Chromosome Location	chr15:78047118-78047119
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78039556..78042296-chr15:78046861..78049587,2	K562	blood:
2	chr15:78037605..78040369-chr15:78045889..78047817,2	MCF-7	breast:
3	chr15:78045800..78048382-chr15:78053626..78056901,3	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11853548	1.00[EUR][1000 genomes]
rs11853824	1.00[EUR][1000 genomes]
rs11854532	1.00[EUR][1000 genomes]
rs11855576	1.00[EUR][1000 genomes]
rs11857529	1.00[EUR][1000 genomes]
rs12324340	1.00[EUR][1000 genomes]
rs2667765	1.00[EUR][1000 genomes]
rs28497073	0.83[AMR][1000 genomes]
rs28498563	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28498879	1.00[EUR][1000 genomes]
rs28557414	1.00[EUR][1000 genomes]
rs28634734	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28635388	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34611551	1.00[EUR][1000 genomes]
rs57215429	1.00[EUR][1000 genomes]
rs57365401	1.00[EUR][1000 genomes]
rs57738968	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58372659	1.00[EUR][1000 genomes]
rs58432220	1.00[EUR][1000 genomes]
rs58490956	1.00[EUR][1000 genomes]
rs58723442	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58745170	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59320137	1.00[EUR][1000 genomes]
rs60322323	1.00[EUR][1000 genomes]
rs60380768	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60772286	1.00[EUR][1000 genomes]
rs6495243	1.00[EUR][1000 genomes]
rs7181139	1.00[EUR][1000 genomes]
rs7182984	1.00[EUR][1000 genomes]
rs73448973	1.00[EUR][1000 genomes]
rs73450724	1.00[EUR][1000 genomes]
rs73450959	1.00[EUR][1000 genomes]
rs74025393	1.00[EUR][1000 genomes]
rs8037835	1.00[EUR][1000 genomes]
rs907375	1.00[EUR][1000 genomes]
rs907394	1.00[EUR][1000 genomes]
rs907397	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv904420	chr15:78025267-78078903	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv904421	chr15:78041789-78129964	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78044400-78047400	Enhancers	Fetal Brain Female	brain
2	chr15:78045600-78047600	Enhancers	Fetal Brain Male	brain
3	chr15:78045600-78048800	Weak transcription	Spleen	Spleen
4	chr15:78046000-78047200	Enhancers	Brain Germinal Matrix	brain
5	chr15:78046200-78048600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr15:78046600-78051400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:78046800-78055200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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