Variant report

Variant	rs11855280
Chromosome Location	chr15:41840922-41840923
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11070337	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11855347	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858529	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858969	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12101764	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101781	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441959	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593440	0.81[AMR][1000 genomes]
rs16971858	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16971861	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2289741	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2305031	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4923901	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56786077	0.81[AMR][1000 genomes]
rs928371	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41837200-41850000	Weak transcription	Brain Anterior Caudate	brain
2	chr15:41837200-41850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:41837400-41847000	Weak transcription	Spleen	Spleen
4	chr15:41839600-41841000	Enhancers	Hela-S3	cervix
5	chr15:41839600-41841800	Weak transcription	Fetal Intestine Large	intestine
6	chr15:41839600-41841800	Weak transcription	Fetal Intestine Small	intestine
7	chr15:41839600-41841800	Weak transcription	HepG2	liver
8	chr15:41839600-41842000	Weak transcription	Stomach Mucosa	stomach
9	chr15:41839600-41845800	Weak transcription	K562	blood
10	chr15:41839800-41845800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:41840000-41842000	Weak transcription	Duodenum Mucosa	Duodenum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links