Variant report

Variant	rs16971861
Chromosome Location	chr15:41846017-41846018
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11070337	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11855280	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11855347	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11858529	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11858969	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12101764	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12101781	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12441959	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16971858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2289741	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2305031	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4923901	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923902	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4923903	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs928371	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41837200-41850000	Weak transcription	Brain Anterior Caudate	brain
2	chr15:41837200-41850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:41837400-41847000	Weak transcription	Spleen	Spleen
4	chr15:41843600-41846800	Weak transcription	Fetal Intestine Large	intestine
5	chr15:41843600-41846800	Weak transcription	Fetal Intestine Small	intestine
6	chr15:41845600-41847400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:41845800-41846200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:41845800-41846200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:41845800-41846200	Bivalent Enhancer	HepG2	liver
10	chr15:41845800-41846200	Enhancers	Osteobl	bone
11	chr15:41845800-41847400	Enhancers	HSMM	muscle
12	chr15:41845800-41850600	Enhancers	HUVEC	blood vessel
13	chr15:41846000-41846400	Enhancers	HSMMtube	muscle
14	chr15:41846000-41846400	Weak transcription	K562	blood
15	chr15:41846000-41846600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr15:41846000-41846800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:41846000-41847200	Weak transcription	Hela-S3	cervix
18	chr15:41846000-41850000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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