Variant report

Variant	rs12101764
Chromosome Location	chr15:41835494-41835495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41827594..41830988-chr15:41833491..41835867,5	K562	blood:
2	chr15:41827251..41831779-chr15:41832424..41837409,12	K562	blood:
3	chr15:41766272..41768220-chr15:41833499..41835975,2	K562	blood:
4	chr15:41834571..41836708-chr15:41849262..41851156,2	K562	blood:
5	chr15:41822152..41826086-chr15:41831755..41835975,4	K562	blood:
6	chr15:41783980..41786928-chr15:41835398..41839034,5	K562	blood:
7	chr15:41812182..41819156-chr15:41830894..41838104,9	K562	blood:
8	chr15:41812182..41814825-chr15:41833135..41836029,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000092445	Chromatin interaction
ENSG00000137825	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000137815	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11070337	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11855280	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855347	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858529	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858969	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12101781	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441959	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971858	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16971861	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2289741	0.88[ASN][1000 genomes]
rs2305031	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4923901	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923902	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923903	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs928371	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904112	chr15:41806658-41836234	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41807200-41835600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:41821800-41835600	Weak transcription	Psoas Muscle	Psoas
3	chr15:41821800-41835800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:41822200-41835800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:41823000-41835600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:41823200-41835800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:41823400-41835600	Weak transcription	Small Intestine	intestine
8	chr15:41823400-41835800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr15:41823600-41835600	Weak transcription	Stomach Mucosa	stomach
10	chr15:41825400-41835800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:41826600-41835800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:41827800-41835800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:41828800-41835600	Weak transcription	HSMMtube	muscle
14	chr15:41828800-41835800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:41828800-41835800	Weak transcription	Fetal Kidney	kidney
16	chr15:41829000-41835600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:41829000-41835600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:41829000-41835800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:41829000-41835800	Weak transcription	NH-A	brain
20	chr15:41829200-41835600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:41829200-41835600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr15:41829200-41835600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:41829200-41835600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:41829200-41835600	Weak transcription	Brain Angular Gyrus	brain
25	chr15:41829200-41835600	Weak transcription	Fetal Thymus	thymus
26	chr15:41829200-41835600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:41829200-41835800	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr15:41829200-41836000	Weak transcription	Lung	lung
29	chr15:41829400-41835600	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr15:41829400-41835600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:41829400-41835600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:41829400-41835600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:41829400-41835600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr15:41829400-41835600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr15:41829400-41835600	Weak transcription	Liver	Liver
36	chr15:41829400-41835600	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:41829400-41835600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:41829400-41835600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:41829400-41835600	Weak transcription	Placenta	Placenta
40	chr15:41829400-41835600	Weak transcription	Pancreas	Pancrea
41	chr15:41829400-41835600	Weak transcription	Spleen	Spleen
42	chr15:41829400-41835600	Weak transcription	HSMM	muscle
43	chr15:41829400-41835800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr15:41829400-41835800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr15:41829400-41835800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr15:41829400-41835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:41829400-41835800	Weak transcription	Adipose Nuclei	Adipose
48	chr15:41829400-41835800	Weak transcription	Aorta	Aorta
49	chr15:41829400-41835800	Weak transcription	Colonic Mucosa	Colon
50	chr15:41829400-41835800	Weak transcription	Colon Smooth Muscle	Colon

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