Variant report

Variant	rs11858529
Chromosome Location	chr15:41839104-41839105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:41838983-41839798	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41789722..41792124-chr15:41838344..41840326,2	K562	blood:
2	chr15:41835713..41840265-chr15:41851401..41853463,4	K562	blood:
3	chr15:41784771..41788118-chr15:41836495..41840463,4	K562	blood:
4	chr15:41838018..41840658-chr15:41840719..41842953,2	K562	blood:
5	chr15:41826025..41828803-chr15:41838381..41841118,2	MCF-7	breast:

No data

Variant related genes	Relation type
RPAP1	TF binding region
ENSG00000103932	Chromatin interaction
ENSG00000092445	Chromatin interaction
ENSG00000137825	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11070337	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11855280	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855347	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858969	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12101764	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12101781	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441959	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12593440	0.81[AMR][1000 genomes]
rs16971858	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16971861	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2289741	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2305031	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4923901	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56786077	0.81[AMR][1000 genomes]
rs928371	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41836600-41839400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:41837000-41839200	Weak transcription	A549	lung
3	chr15:41837000-41839200	Weak transcription	HSMM	muscle
4	chr15:41837200-41839200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:41837200-41839200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:41837200-41839200	Weak transcription	Adipose Nuclei	Adipose
7	chr15:41837200-41839200	Weak transcription	Osteobl	bone
8	chr15:41837200-41850000	Weak transcription	Brain Anterior Caudate	brain
9	chr15:41837200-41850200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:41837400-41847000	Weak transcription	Spleen	Spleen
11	chr15:41838600-41839600	Enhancers	Fetal Intestine Large	intestine
12	chr15:41838600-41840000	Enhancers	Duodenum Mucosa	Duodenum
13	chr15:41838800-41839600	Enhancers	Fetal Intestine Small	intestine
14	chr15:41838800-41839600	Enhancers	Stomach Mucosa	stomach
15	chr15:41838800-41839600	Flanking Active TSS	Hela-S3	cervix
16	chr15:41838800-41839600	Enhancers	HepG2	liver
17	chr15:41838800-41839800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:41839000-41839200	Enhancers	Esophagus	oesophagus
19	chr15:41839000-41839200	Enhancers	HSMMtube	muscle
20	chr15:41839000-41839400	Enhancers	NHDF-Ad	bronchial
21	chr15:41839000-41839600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:41839000-41839600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:41839000-41839600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr15:41839000-41839600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr15:41839000-41839600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:41839000-41839600	Enhancers	K562	blood
27	chr15:41839000-41839800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:41839000-41839800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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