Variant report

Variant	rs12101781
Chromosome Location	chr15:41835726-41835727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41827594..41830988-chr15:41833491..41835867,5	K562	blood:
2	chr15:41827251..41831779-chr15:41832424..41837409,12	K562	blood:
3	chr15:41785172..41787151-chr15:41835585..41837884,2	MCF-7	breast:
4	chr15:41766272..41768220-chr15:41833499..41835975,2	K562	blood:
5	chr15:41834571..41836708-chr15:41849262..41851156,2	K562	blood:
6	chr15:41835713..41840265-chr15:41851401..41853463,4	K562	blood:
7	chr15:41822152..41826086-chr15:41831755..41835975,4	K562	blood:
8	chr15:41783980..41786928-chr15:41835398..41839034,5	K562	blood:
9	chr15:41835700..41837704-chr15:42118864..42120391,2	K562	blood:
10	chr15:41812182..41819156-chr15:41830894..41838104,9	K562	blood:
11	chr15:41407191..41409421-chr15:41835564..41837898,2	MCF-7	breast:
12	chr15:41812182..41814825-chr15:41833135..41836029,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000243789	Chromatin interaction
ENSG00000092445	Chromatin interaction
ENSG00000103932	Chromatin interaction
ENSG00000128908	Chromatin interaction
ENSG00000137815	Chromatin interaction
ENSG00000137825	Chromatin interaction
ENSG00000168970	Chromatin interaction
ENSG00000250379	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11070337	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11855280	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11855347	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858529	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858969	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12101764	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12441959	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16971858	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16971861	1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2289741	0.88[ASN][1000 genomes]
rs2305031	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4923901	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4923902	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4923903	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs928371	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904112	chr15:41806658-41836234	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41821800-41835800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:41822200-41835800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:41823200-41835800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:41823400-41835800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:41825400-41835800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr15:41826600-41835800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr15:41827800-41835800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:41828800-41835800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:41828800-41835800	Weak transcription	Fetal Kidney	kidney
10	chr15:41829000-41835800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr15:41829000-41835800	Weak transcription	NH-A	brain
12	chr15:41829200-41835800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr15:41829200-41836000	Weak transcription	Lung	lung
14	chr15:41829400-41835800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:41829400-41835800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:41829400-41835800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr15:41829400-41835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:41829400-41835800	Weak transcription	Adipose Nuclei	Adipose
19	chr15:41829400-41835800	Weak transcription	Aorta	Aorta
20	chr15:41829400-41835800	Weak transcription	Colonic Mucosa	Colon
21	chr15:41829400-41835800	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:41829400-41835800	Weak transcription	Esophagus	oesophagus
23	chr15:41829400-41835800	Weak transcription	Gastric	stomach
24	chr15:41829400-41835800	Weak transcription	Left Ventricle	heart
25	chr15:41829400-41835800	Weak transcription	Ovary	ovary
26	chr15:41829400-41835800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr15:41829400-41836000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:41829600-41835800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:41834800-41835800	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr15:41835000-41835800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr15:41835000-41835800	Enhancers	Brain Cingulate Gyrus	brain
32	chr15:41835000-41835800	Enhancers	Brain Germinal Matrix	brain
33	chr15:41835000-41835800	Enhancers	Fetal Lung	lung
34	chr15:41835000-41835800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr15:41835000-41836000	Flanking Active TSS	Hela-S3	cervix
36	chr15:41835000-41836800	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr15:41835000-41837000	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr15:41835000-41837000	Active TSS	iPS-20b Cell Line	embryonic stem cell
39	chr15:41835200-41835800	Enhancers	Primary B cells from cord blood	blood
40	chr15:41835200-41835800	Enhancers	Primary hematopoietic stem cells	blood
41	chr15:41835200-41835800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr15:41835200-41835800	Enhancers	Primary T helper cells PMA-I stimulated	--
43	chr15:41835200-41835800	Enhancers	Brain Substantia Nigra	brain
44	chr15:41835200-41835800	Enhancers	Fetal Heart	heart
45	chr15:41835200-41835800	Enhancers	Stomach Smooth Muscle	stomach
46	chr15:41835200-41836800	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr15:41835200-41836800	Active TSS	iPS-18 Cell Line	embryonic stem cell
48	chr15:41835200-41836800	Active TSS	NHLF	lung
49	chr15:41835200-41837000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:41835400-41835800	Enhancers	Fetal Brain Male	brain

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