Variant report

Variant	rs11863759
Chromosome Location	chr16:72705001-72705002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFHX3-3	chr16:72704954-72705157	NONHSAT143597

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs11861408	1.00[EUR][1000 genomes]
rs11861672	1.00[EUR][1000 genomes]
rs11865496	1.00[EUR][1000 genomes]
rs11866292	1.00[EUR][1000 genomes]
rs12103150	1.00[EUR][1000 genomes]
rs13329845	1.00[EUR][1000 genomes]
rs13331987	1.00[EUR][1000 genomes]
rs13332257	1.00[EUR][1000 genomes]
rs13336634	1.00[EUR][1000 genomes]
rs13338662	1.00[EUR][1000 genomes]
rs13339625	1.00[EUR][1000 genomes]
rs16970996	1.00[EUR][1000 genomes]
rs16971006	1.00[EUR][1000 genomes]
rs16971145	1.00[EUR][1000 genomes]
rs16971240	1.00[EUR][1000 genomes]
rs16971367	1.00[EUR][1000 genomes]
rs16971373	1.00[EUR][1000 genomes]
rs2840012	1.00[EUR][1000 genomes]
rs28459407	1.00[EUR][1000 genomes]
rs28464989	1.00[EUR][1000 genomes]
rs28514442	1.00[EUR][1000 genomes]
rs28530505	1.00[EUR][1000 genomes]
rs28568963	1.00[EUR][1000 genomes]
rs28569075	1.00[EUR][1000 genomes]
rs28616025	1.00[EUR][1000 genomes]
rs28693857	1.00[EUR][1000 genomes]
rs28828717	1.00[EUR][1000 genomes]
rs28847294	1.00[EUR][1000 genomes]
rs4255793	1.00[EUR][1000 genomes]
rs4624185	1.00[EUR][1000 genomes]
rs55777547	1.00[EUR][1000 genomes]
rs56991537	1.00[EUR][1000 genomes]
rs58363387	1.00[EUR][1000 genomes]
rs58819288	1.00[EUR][1000 genomes]
rs61192283	1.00[EUR][1000 genomes]
rs6499589	1.00[EUR][1000 genomes]
rs7184113	1.00[EUR][1000 genomes]
rs7184224	1.00[EUR][1000 genomes]
rs7185566	1.00[EUR][1000 genomes]
rs7187768	1.00[EUR][1000 genomes]
rs7192337	1.00[EUR][1000 genomes]
rs7193704	1.00[EUR][1000 genomes]
rs7195234	1.00[EUR][1000 genomes]
rs7197918	1.00[EUR][1000 genomes]
rs7199507	1.00[EUR][1000 genomes]
rs7199594	1.00[EUR][1000 genomes]
rs7202598	1.00[EUR][1000 genomes]
rs7203819	1.00[EUR][1000 genomes]
rs73583171	1.00[EUR][1000 genomes]
rs73583174	1.00[EUR][1000 genomes]
rs73583188	1.00[EUR][1000 genomes]
rs73583198	1.00[EUR][1000 genomes]
rs73584928	1.00[EUR][1000 genomes]
rs73584931	1.00[EUR][1000 genomes]
rs73584955	1.00[EUR][1000 genomes]
rs73590703	1.00[EUR][1000 genomes]
rs73590712	1.00[EUR][1000 genomes]
rs73590718	1.00[EUR][1000 genomes]
rs73590724	1.00[EUR][1000 genomes]
rs73601423	1.00[EUR][1000 genomes]
rs8043976	1.00[EUR][1000 genomes]
rs8045319	1.00[EUR][1000 genomes]
rs8045813	1.00[EUR][1000 genomes]
rs8050489	1.00[EUR][1000 genomes]
rs8051123	1.00[EUR][1000 genomes]
rs8051420	1.00[EUR][1000 genomes]
rs8053566	1.00[EUR][1000 genomes]
rs8053837	1.00[EUR][1000 genomes]
rs8057796	1.00[EUR][1000 genomes]
rs8059369	1.00[EUR][1000 genomes]
rs8061838	1.00[EUR][1000 genomes]
rs9926706	1.00[EUR][1000 genomes]
rs9928673	1.00[EUR][1000 genomes]
rs9929006	1.00[EUR][1000 genomes]
rs9932125	1.00[EUR][1000 genomes]
rs9933331	1.00[EUR][1000 genomes]
rs9933418	1.00[EUR][1000 genomes]
rs9934152	1.00[EUR][1000 genomes]
rs9935400	1.00[EUR][1000 genomes]
rs9935518	1.00[EUR][1000 genomes]
rs9935826	1.00[EUR][1000 genomes]
rs9938038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060983	chr16:72074832-72791629	Genic enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1060804	chr16:72078486-72791629	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv534039	chr16:72287171-72851170	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv530712	chr16:72499171-72744114	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1063049	chr16:72577004-72887111	Weak transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv542952	chr16:72577004-72887111	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
7	nsv1059111	chr16:72647569-72751907	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	esv1822094	chr16:72694760-72787961	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv572958	chr16:72696112-72778617	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72699800-72706400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:72700000-72705400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr16:72700000-72705600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:72700000-72705800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr16:72700400-72705600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr16:72700400-72706200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:72701200-72705200	Weak transcription	Dnd41	blood
8	chr16:72703400-72706400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr16:72703800-72706800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:72704600-72705200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr16:72704600-72705400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr16:72704800-72706200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr16:72705000-72705800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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