Variant report

Variant	rs9935518
Chromosome Location	chr16:72911858-72911859
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72897681..72899604-chr16:72909159..72912052,2	MCF-7	breast:
2	chr16:72910249..72913180-chr16:72960243..72962948,2	MCF-7	breast:
3	chr16:72906922..72909977-chr16:72911747..72914412,3	MCF-7	breast:
4	chr16:72908996..72912815-chr16:73090105..73094174,3	MCF-7	breast:
5	chr16:72901309..72904855-chr16:72910459..72914391,3	MCF-7	breast:
6	chr16:72907493..72909909-chr16:72910330..72912576,2	MCF-7	breast:
7	chr16:72869681..72872432-chr16:72909425..72912073,2	MCF-7	breast:
8	chr16:72910303..72916388-chr16:73088434..73093431,5	MCF-7	breast:
9	chr16:72909950..72913062-chr16:72961183..72965659,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272250	Chromatin interaction
ENSG00000140836	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11861408	1.00[EUR][1000 genomes]
rs11861672	1.00[EUR][1000 genomes]
rs11863759	1.00[EUR][1000 genomes]
rs11865496	1.00[EUR][1000 genomes]
rs13329845	1.00[EUR][1000 genomes]
rs13331987	1.00[EUR][1000 genomes]
rs16971145	1.00[EUR][1000 genomes]
rs16971240	1.00[EUR][1000 genomes]
rs16971367	1.00[EUR][1000 genomes]
rs16971373	1.00[EUR][1000 genomes]
rs16971382	1.00[EUR][1000 genomes]
rs16971547	1.00[EUR][1000 genomes]
rs28464989	1.00[EUR][1000 genomes]
rs28530505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28693857	1.00[EUR][1000 genomes]
rs28828717	1.00[EUR][1000 genomes]
rs28847294	1.00[EUR][1000 genomes]
rs56804755	1.00[EUR][1000 genomes]
rs56991537	1.00[EUR][1000 genomes]
rs60176428	1.00[EUR][1000 genomes]
rs61235372	1.00[EUR][1000 genomes]
rs61655021	1.00[EUR][1000 genomes]
rs6499589	1.00[EUR][1000 genomes]
rs7187768	1.00[EUR][1000 genomes]
rs7193704	1.00[EUR][1000 genomes]
rs7195234	1.00[EUR][1000 genomes]
rs7197918	1.00[EUR][1000 genomes]
rs7202598	1.00[EUR][1000 genomes]
rs73584928	1.00[EUR][1000 genomes]
rs73584931	1.00[EUR][1000 genomes]
rs73584955	1.00[EUR][1000 genomes]
rs73590703	1.00[EUR][1000 genomes]
rs73590712	1.00[EUR][1000 genomes]
rs73590718	1.00[EUR][1000 genomes]
rs73590724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73590791	1.00[EUR][1000 genomes]
rs8043976	1.00[EUR][1000 genomes]
rs8051371	1.00[EUR][1000 genomes]
rs8061838	1.00[EUR][1000 genomes]
rs9926706	1.00[EUR][1000 genomes]
rs9929006	1.00[EUR][1000 genomes]
rs9933331	1.00[EUR][1000 genomes]
rs9933418	1.00[EUR][1000 genomes]
rs9938038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572959	chr16:72890216-72923327	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr16:72883600-72912200	Weak transcription	Ovary	ovary
3	chr16:72895200-72918000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr16:72900400-72912000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr16:72906600-72913000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:72907800-72912600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr16:72907800-72916400	Weak transcription	Fetal Brain Female	brain
8	chr16:72908400-72912400	Enhancers	Small Intestine	intestine
9	chr16:72908400-72912600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr16:72908400-72913000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr16:72908400-72913200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr16:72908400-72914400	Enhancers	Fetal Intestine Large	intestine
13	chr16:72908800-72912800	Enhancers	Primary hematopoietic stem cells	blood
14	chr16:72908800-72912800	Enhancers	Dnd41	blood
15	chr16:72908800-72913000	Enhancers	NHDF-Ad	bronchial
16	chr16:72908800-72913200	Enhancers	Left Ventricle	heart
17	chr16:72908800-72913200	Enhancers	NHLF	lung
18	chr16:72909000-72912600	Enhancers	NHEK	skin
19	chr16:72909000-72912800	Enhancers	Adipose Nuclei	Adipose
20	chr16:72909000-72913000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr16:72909000-72913000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr16:72909000-72913000	Enhancers	Fetal Muscle Leg	muscle
23	chr16:72909000-72913000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr16:72909000-72913400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr16:72909000-72914400	Enhancers	Placenta	Placenta
26	chr16:72909200-72912400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr16:72909200-72912800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr16:72909200-72913000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr16:72909400-72914000	Enhancers	Fetal Muscle Trunk	muscle
30	chr16:72909400-72915600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr16:72909400-72918200	Weak transcription	Brain Substantia Nigra	brain
32	chr16:72909600-72912600	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr16:72909600-72912600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr16:72909600-72913000	Enhancers	Liver	Liver
35	chr16:72909600-72918400	Weak transcription	Brain Anterior Caudate	brain
36	chr16:72910000-72916200	Weak transcription	Rectal Smooth Muscle	rectum
37	chr16:72910200-72913000	Enhancers	Right Atrium	heart
38	chr16:72910200-72916400	Weak transcription	Brain Hippocampus Middle	brain
39	chr16:72910400-72912200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr16:72910400-72912200	Weak transcription	Psoas Muscle	Psoas
41	chr16:72910400-72913200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr16:72910400-72920400	Weak transcription	Fetal Kidney	kidney
43	chr16:72910400-72925200	Weak transcription	Primary B cells from cord blood	blood
44	chr16:72910600-72915400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr16:72910800-72912800	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr16:72910800-72912800	Enhancers	Pancreas	Pancrea
47	chr16:72910800-72913000	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr16:72910800-72913000	Enhancers	Duodenum Mucosa	Duodenum
49	chr16:72910800-72913000	Enhancers	Placenta Amnion	Placenta Amnion
50	chr16:72910800-72913200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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