Variant report

Variant	rs7202598
Chromosome Location	chr16:72894445-72894446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72893172..72894972-chr16:72898308..72901387,3	MCF-7	breast:
2	chr16:72893709..72896172-chr16:72897326..72901024,3	MCF-7	breast:
3	chr16:72882451..72883967-chr16:72893817..72896287,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11861408	1.00[EUR][1000 genomes]
rs11861672	1.00[EUR][1000 genomes]
rs11863759	1.00[EUR][1000 genomes]
rs11865496	1.00[EUR][1000 genomes]
rs13329845	1.00[EUR][1000 genomes]
rs13331987	1.00[EUR][1000 genomes]
rs16971145	1.00[EUR][1000 genomes]
rs16971240	1.00[EUR][1000 genomes]
rs16971367	1.00[EUR][1000 genomes]
rs16971373	1.00[EUR][1000 genomes]
rs16971382	1.00[EUR][1000 genomes]
rs28464989	1.00[EUR][1000 genomes]
rs28530505	1.00[EUR][1000 genomes]
rs28693857	1.00[EUR][1000 genomes]
rs28828717	1.00[EUR][1000 genomes]
rs28847294	1.00[EUR][1000 genomes]
rs4255793	1.00[EUR][1000 genomes]
rs56804755	1.00[EUR][1000 genomes]
rs56991537	1.00[EUR][1000 genomes]
rs60176428	1.00[EUR][1000 genomes]
rs61235372	1.00[EUR][1000 genomes]
rs61655021	1.00[EUR][1000 genomes]
rs6499589	1.00[EUR][1000 genomes]
rs7187768	1.00[EUR][1000 genomes]
rs7193704	1.00[EUR][1000 genomes]
rs7195234	1.00[EUR][1000 genomes]
rs7197918	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7199507	1.00[EUR][1000 genomes]
rs7199594	1.00[EUR][1000 genomes]
rs73583198	1.00[EUR][1000 genomes]
rs73584928	1.00[EUR][1000 genomes]
rs73584931	1.00[EUR][1000 genomes]
rs73584955	1.00[EUR][1000 genomes]
rs73590703	1.00[EUR][1000 genomes]
rs73590712	1.00[EUR][1000 genomes]
rs73590718	1.00[EUR][1000 genomes]
rs73590724	1.00[EUR][1000 genomes]
rs73590791	1.00[EUR][1000 genomes]
rs8043976	1.00[EUR][1000 genomes]
rs8051371	1.00[EUR][1000 genomes]
rs8061838	1.00[EUR][1000 genomes]
rs9926706	1.00[EUR][1000 genomes]
rs9929006	1.00[EUR][1000 genomes]
rs9933331	1.00[EUR][1000 genomes]
rs9933418	1.00[EUR][1000 genomes]
rs9935518	1.00[EUR][1000 genomes]
rs9938038	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572959	chr16:72890216-72923327	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72883200-72899200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr16:72883200-72909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr16:72883400-72898400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:72883400-72898600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:72883400-72908400	Weak transcription	Fetal Intestine Large	intestine
6	chr16:72883400-72918800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr16:72883600-72912200	Weak transcription	Ovary	ovary
8	chr16:72883800-72908800	Weak transcription	Hela-S3	cervix
9	chr16:72884200-72899200	Weak transcription	Liver	Liver
10	chr16:72884200-72902200	Weak transcription	Right Ventricle	heart
11	chr16:72884200-72911600	Weak transcription	Gastric	stomach
12	chr16:72885200-72909000	Weak transcription	Lung	lung
13	chr16:72885400-72898200	Weak transcription	A549	lung
14	chr16:72888200-72894800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr16:72889200-72902400	Weak transcription	Spleen	Spleen
16	chr16:72889200-72908800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr16:72890400-72899000	Weak transcription	Aorta	Aorta
18	chr16:72891400-72908400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr16:72891800-72895600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr16:72891800-72899200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr16:72892000-72896200	Enhancers	Placenta	Placenta
22	chr16:72892400-72895400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr16:72892600-72900000	Weak transcription	Brain Angular Gyrus	brain
24	chr16:72892800-72895000	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:72892800-72897400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:72893000-72894600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr16:72893000-72894800	Weak transcription	Brain Cingulate Gyrus	brain
28	chr16:72893000-72894800	Weak transcription	Fetal Brain Female	brain
29	chr16:72893000-72899200	Weak transcription	Left Ventricle	heart
30	chr16:72893000-72904000	Weak transcription	Pancreas	Pancrea
31	chr16:72893000-72909600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr16:72893200-72900600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr16:72893200-72911400	Weak transcription	Stomach Mucosa	stomach
34	chr16:72893400-72894800	Weak transcription	Right Atrium	heart
35	chr16:72893400-72894800	Enhancers	NH-A	brain
36	chr16:72893400-72898800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr16:72893400-72909000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr16:72893600-72895200	Weak transcription	Fetal Muscle Leg	muscle
39	chr16:72893600-72902600	Weak transcription	Adipose Nuclei	Adipose
40	chr16:72893600-72909000	Weak transcription	Colon Smooth Muscle	Colon
41	chr16:72893600-72909400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr16:72893800-72894800	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr16:72893800-72894800	Weak transcription	Psoas Muscle	Psoas
44	chr16:72893800-72898400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr16:72893800-72898400	Weak transcription	Fetal Intestine Small	intestine
46	chr16:72893800-72899800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr16:72893800-72900000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr16:72893800-72907000	Weak transcription	Fetal Kidney	kidney
49	chr16:72893800-72909200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr16:72894000-72894800	Genic enhancers	HepG2	liver

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