Variant report

Variant	rs61235372
Chromosome Location	chr16:72990343-72990344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72987229..72991239-chr16:72992488..72995429,4	K562	blood:
2	chr16:72990066..72991755-chr16:73080647..73083251,2	MCF-7	breast:
3	chr16:72989385..72992195-chr16:73028743..73030750,2	MCF-7	breast:
4	chr16:72987849..72990412-chr16:73015041..73018020,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction

rs_ID	r²[population]
rs11860964	1.00[EUR][1000 genomes]
rs11861408	1.00[EUR][1000 genomes]
rs11865496	1.00[EUR][1000 genomes]
rs13329845	1.00[EUR][1000 genomes]
rs16971367	1.00[EUR][1000 genomes]
rs16971373	1.00[EUR][1000 genomes]
rs16971382	1.00[EUR][1000 genomes]
rs16971547	1.00[EUR][1000 genomes]
rs28530505	1.00[EUR][1000 genomes]
rs28693857	1.00[EUR][1000 genomes]
rs56804755	1.00[EUR][1000 genomes]
rs56991537	1.00[EUR][1000 genomes]
rs60176428	1.00[EUR][1000 genomes]
rs61655021	1.00[EUR][1000 genomes]
rs7193704	1.00[EUR][1000 genomes]
rs7195234	1.00[EUR][1000 genomes]
rs7197918	1.00[EUR][1000 genomes]
rs7202598	1.00[EUR][1000 genomes]
rs73590703	1.00[EUR][1000 genomes]
rs73590712	1.00[EUR][1000 genomes]
rs73590718	1.00[EUR][1000 genomes]
rs73590724	1.00[EUR][1000 genomes]
rs73590791	1.00[EUR][1000 genomes]
rs8051371	1.00[EUR][1000 genomes]
rs8052708	1.00[EUR][1000 genomes]
rs9921373	1.00[EUR][1000 genomes]
rs9931618	1.00[EUR][1000 genomes]
rs9933331	1.00[EUR][1000 genomes]
rs9933418	1.00[EUR][1000 genomes]
rs9935518	1.00[EUR][1000 genomes]

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72966600-72992000	Weak transcription	Primary B cells from cord blood	blood
2	chr16:72972600-72992000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:72973000-72995400	Weak transcription	Brain Angular Gyrus	brain
4	chr16:72973200-72993800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr16:72973400-72990800	Weak transcription	HUVEC	blood vessel
6	chr16:72973400-73006400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:72975000-72991800	Weak transcription	Hela-S3	cervix
8	chr16:72980200-72995400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr16:72980400-72997600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:72982200-72993000	Weak transcription	Fetal Brain Male	brain
11	chr16:72982200-72996200	Weak transcription	Small Intestine	intestine
12	chr16:72982600-72994600	Weak transcription	Fetal Heart	heart
13	chr16:72984600-72992200	Weak transcription	NHEK	skin
14	chr16:72984800-72991000	Weak transcription	Adipose Nuclei	Adipose
15	chr16:72984800-72991200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr16:72984800-72991400	Weak transcription	Colonic Mucosa	Colon
17	chr16:72984800-72991400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr16:72984800-72991400	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr16:72984800-72992000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr16:72984800-72992200	Weak transcription	Brain Anterior Caudate	brain
21	chr16:72984800-72992400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr16:72984800-72995200	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr16:72985000-72990800	Weak transcription	Fetal Lung	lung
24	chr16:72985000-72991200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr16:72985000-72991200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr16:72985000-72991200	Weak transcription	Left Ventricle	heart
27	chr16:72985000-72991200	Weak transcription	Lung	lung
28	chr16:72985000-72991200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr16:72985000-72991400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr16:72985000-72991400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr16:72985000-72991400	Weak transcription	Right Ventricle	heart
32	chr16:72985000-72991600	Weak transcription	Spleen	Spleen
33	chr16:72985000-72991800	Weak transcription	Brain Germinal Matrix	brain
34	chr16:72985000-72992200	Weak transcription	Fetal Brain Female	brain
35	chr16:72985000-72994800	Weak transcription	Dnd41	blood
36	chr16:72985000-72995000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr16:72986400-72991200	Weak transcription	Esophagus	oesophagus
38	chr16:72986800-72991200	Weak transcription	Gastric	stomach
39	chr16:72986800-72992200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr16:72987200-72991200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr16:72987200-72991400	Weak transcription	Ovary	ovary
42	chr16:72987200-72997800	Weak transcription	Fetal Kidney	kidney
43	chr16:72987200-73012200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr16:72987400-72991200	Weak transcription	Pancreas	Pancrea
45	chr16:72987400-72991400	Weak transcription	Aorta	Aorta
46	chr16:72987600-72991200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr16:72987600-72994800	Strong transcription	Fetal Stomach	stomach
48	chr16:72987600-72995400	Weak transcription	NHDF-Ad	bronchial
49	chr16:72987600-72997600	Weak transcription	NH-A	brain
50	chr16:72987600-72997800	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links