Variant report

Variant	rs73590791
Chromosome Location	chr16:72961470-72961471
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72959386..72961957-chr16:73021610..73023717,2	MCF-7	breast:
2	chr16:72953680..72976417-chr16:73079385..73097032,74	MCF-7	breast:
3	chr16:72959073..72962236-chr16:73060952..73063726,3	MCF-7	breast:
4	chr16:72910249..72913180-chr16:72960243..72962948,2	MCF-7	breast:
5	chr16:72959141..72961652-chr8:109478131..109480039,2	MCF-7	breast:
6	chr16:72952169..72957815-chr16:72958620..72964994,7	MCF-7	breast:
7	chr16:72959781..72974555-chr16:73087583..73095401,19	MCF-7	breast:
8	chr16:72959345..72961782-chr16:72994150..72996380,2	MCF-7	breast:
9	chr16:72960117..72961790-chr16:73081159..73082679,2	MCF-7	breast:
10	chr16:72951498..72953724-chr16:72959987..72962706,2	K562	blood:
11	chr16:72876308..72878361-chr16:72959854..72961999,2	MCF-7	breast:
12	chr16:72961272..72961901-chr16:73206740..73207376,2	MCF-7	breast:
13	chr16:72960997..72962941-chr16:73126701..73128728,2	MCF-7	breast:
14	chr16:72909950..72913062-chr16:72961183..72965659,4	MCF-7	breast:
15	chr16:72960498..72962274-chr16:73101154..73102680,2	MCF-7	breast:
16	chr16:72946305..72948375-chr16:72961403..72963246,2	MCF-7	breast:
17	chr16:72696867..72698788-chr16:72960178..72962208,2	MCF-7	breast:
18	chr16:72881102..72884445-chr16:72960009..72964753,5	MCF-7	breast:
19	chr16:72881608..72884159-chr16:72959106..72961995,2	MCF-7	breast:
20	chr16:72932823..72935468-chr16:72960660..72963281,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000272250	Chromatin interaction
ENSG00000140836	Chromatin interaction
ENSG00000271009	Chromatin interaction

rs_ID	r²[population]
rs11861408	1.00[EUR][1000 genomes]
rs11865496	1.00[EUR][1000 genomes]
rs13329845	1.00[EUR][1000 genomes]
rs16971240	1.00[EUR][1000 genomes]
rs16971367	1.00[EUR][1000 genomes]
rs16971373	1.00[EUR][1000 genomes]
rs16971382	1.00[EUR][1000 genomes]
rs16971547	1.00[EUR][1000 genomes]
rs28530505	1.00[EUR][1000 genomes]
rs28693857	1.00[EUR][1000 genomes]
rs28847294	1.00[EUR][1000 genomes]
rs56804755	1.00[EUR][1000 genomes]
rs56991537	1.00[EUR][1000 genomes]
rs60176428	1.00[EUR][1000 genomes]
rs61235372	1.00[EUR][1000 genomes]
rs61655021	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7193704	1.00[EUR][1000 genomes]
rs7195234	1.00[EUR][1000 genomes]
rs7197918	1.00[EUR][1000 genomes]
rs7202598	1.00[EUR][1000 genomes]
rs73590703	1.00[EUR][1000 genomes]
rs73590712	1.00[EUR][1000 genomes]
rs73590718	1.00[EUR][1000 genomes]
rs73590724	1.00[EUR][1000 genomes]
rs8051371	1.00[EUR][1000 genomes]
rs9933331	1.00[EUR][1000 genomes]
rs9933418	1.00[EUR][1000 genomes]
rs9935518	1.00[EUR][1000 genomes]

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72932600-72964600	Weak transcription	Fetal Intestine Large	intestine
2	chr16:72948400-72964400	Weak transcription	Small Intestine	intestine
3	chr16:72955800-72964600	Weak transcription	Adipose Nuclei	Adipose
4	chr16:72956000-72963400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:72956000-72965000	Weak transcription	Right Atrium	heart
6	chr16:72956200-72964800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr16:72956400-72961600	Weak transcription	Fetal Brain Female	brain
8	chr16:72956400-72964400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr16:72956400-72965800	Weak transcription	Fetal Intestine Small	intestine
10	chr16:72956600-72965200	Weak transcription	Left Ventricle	heart
11	chr16:72956800-72964600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr16:72956800-72971600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr16:72957000-72961600	Weak transcription	Dnd41	blood
14	chr16:72957000-72963400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr16:72957200-72964600	Weak transcription	Colon Smooth Muscle	Colon
16	chr16:72958600-72963600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr16:72958600-72964800	Weak transcription	Aorta	Aorta
18	chr16:72959200-72962600	Enhancers	Fetal Lung	lung
19	chr16:72959400-72964800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr16:72959800-72961600	Weak transcription	Gastric	stomach
21	chr16:72959800-72961800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr16:72959800-72964800	Weak transcription	Stomach Mucosa	stomach
23	chr16:72960200-72961800	Enhancers	HSMMtube	muscle
24	chr16:72960200-72962400	Enhancers	Psoas Muscle	Psoas
25	chr16:72960200-72965400	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr16:72960400-72961600	Enhancers	A549	lung
27	chr16:72960400-72962000	Enhancers	Fetal Stomach	stomach
28	chr16:72960400-72962400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr16:72960400-72963600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr16:72960400-72963600	Enhancers	Fetal Muscle Leg	muscle
31	chr16:72960400-72964000	Enhancers	Skeletal Muscle Female	skeletal muscle
32	chr16:72960600-72961600	Enhancers	Brain Hippocampus Middle	brain
33	chr16:72960600-72961800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr16:72960600-72961800	Enhancers	Stomach Smooth Muscle	stomach
35	chr16:72960600-72962000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr16:72960600-72962000	Enhancers	Brain Anterior Caudate	brain
37	chr16:72960600-72962400	Enhancers	Ovary	ovary
38	chr16:72960600-72962400	Enhancers	Pancreas	Pancrea
39	chr16:72960600-72962400	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr16:72960600-72962600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr16:72960600-72962600	Enhancers	Lung	lung
42	chr16:72960600-72962800	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr16:72960600-72963800	Enhancers	Fetal Muscle Trunk	muscle
44	chr16:72960800-72962400	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr16:72960800-72962400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr16:72960800-72964600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr16:72961000-72963600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr16:72961200-72961600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr16:72961200-72961600	Enhancers	Fetal Thymus	thymus
50	chr16:72961200-72961600	Enhancers	Right Ventricle	heart

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