Variant report

Variant	rs11871952
Chromosome Location	chr17:67443777-67443778
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93196488..93198404-chr17:67442282..67443797,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11077447	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11869161	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869348	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451722	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12453226	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12942981	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12943473	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12946388	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964442	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1964443	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2365493	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs817565	0.94[EUR][1000 genomes]
rs817566	0.94[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
2	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
3	chr17:67424400-67443800	Weak transcription	Brain Angular Gyrus	brain
4	chr17:67425400-67454600	Weak transcription	Primary B cells from cord blood	blood
5	chr17:67427000-67444000	Weak transcription	Left Ventricle	heart
6	chr17:67427000-67446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr17:67428200-67443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr17:67430600-67443800	Weak transcription	Small Intestine	intestine
9	chr17:67430800-67443800	Weak transcription	Colonic Mucosa	Colon
10	chr17:67430800-67443800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr17:67431200-67443800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:67439000-67443800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr17:67439000-67445000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr17:67439200-67443800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr17:67439400-67443800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr17:67439600-67444600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr17:67440400-67443800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr17:67440800-67444800	Weak transcription	Spleen	Spleen
19	chr17:67440800-67458200	Weak transcription	Right Atrium	heart
20	chr17:67441400-67443800	Weak transcription	Psoas Muscle	Psoas
21	chr17:67441400-67474600	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr17:67441600-67443800	Weak transcription	Adipose Nuclei	Adipose
23	chr17:67441800-67447000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr17:67442000-67444200	Weak transcription	Primary T cells from cord blood	blood
25	chr17:67442000-67447600	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr17:67442200-67443800	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr17:67442200-67443800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr17:67442200-67444600	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr17:67442600-67443800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr17:67442600-67444000	Weak transcription	Fetal Kidney	kidney
31	chr17:67442600-67444400	Weak transcription	HUVEC	blood vessel
32	chr17:67442600-67446600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr17:67442800-67443800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr17:67442800-67443800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr17:67442800-67444000	Weak transcription	Fetal Brain Female	brain
36	chr17:67443000-67444600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr17:67443000-67444600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr17:67443200-67444400	Weak transcription	Fetal Intestine Large	intestine
39	chr17:67443400-67445200	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr17:67443600-67443800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr17:67443600-67443800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr17:67443600-67443800	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr17:67443600-67444000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr17:67443600-67444200	Enhancers	H9 Cell Line	embryonic stem cell
45	chr17:67443600-67444200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr17:67443600-67444200	Enhancers	Brain Hippocampus Middle	brain
47	chr17:67443600-67444400	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr17:67443600-67444600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
49	chr17:67443600-67444800	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr17:67443600-67444800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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