Variant report

Variant	rs2365493
Chromosome Location	chr17:67437986-67437987
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67415729..67418090-chr17:67437901..67439947,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11077447	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11869161	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11869348	0.95[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11871952	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12451722	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12453226	0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12942981	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12943473	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12946388	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1964442	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1964443	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs817564	0.81[CEU][hapmap]
rs817565	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs817566	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs9892444	0.81[CEU][hapmap]
rs9905795	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520649	chr17:67420433-67440811	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
2	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
3	chr17:67424400-67443800	Weak transcription	Brain Angular Gyrus	brain
4	chr17:67425400-67454600	Weak transcription	Primary B cells from cord blood	blood
5	chr17:67427000-67444000	Weak transcription	Left Ventricle	heart
6	chr17:67427000-67446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr17:67427400-67441400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr17:67428200-67443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr17:67430600-67443800	Weak transcription	Small Intestine	intestine
10	chr17:67430800-67438800	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr17:67430800-67440600	Weak transcription	Right Atrium	heart
12	chr17:67430800-67440800	Weak transcription	Psoas Muscle	Psoas
13	chr17:67430800-67443800	Weak transcription	Colonic Mucosa	Colon
14	chr17:67430800-67443800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr17:67431200-67438000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr17:67431200-67438800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:67431200-67443800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr17:67432400-67443600	Weak transcription	Fetal Stomach	stomach
19	chr17:67433000-67438000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr17:67433000-67438000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr17:67433000-67438600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr17:67434400-67443600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr17:67435600-67441400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr17:67436000-67443600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr17:67436200-67439400	Weak transcription	Esophagus	oesophagus
26	chr17:67436200-67439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr17:67437000-67441400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr17:67437200-67440400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr17:67437400-67439200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr17:67437400-67440800	Weak transcription	Primary T cells from cord blood	blood
31	chr17:67437800-67438200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr17:67437800-67439000	Enhancers	HUES48 Cell Line	embryonic stem cell

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