Variant report

Variant	rs12451722
Chromosome Location	chr17:67434225-67434226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11077447	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869161	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11869348	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11871952	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12453226	0.91[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12942981	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12943473	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12946388	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1964442	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1964443	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1972933	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs2365493	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6501326	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs707247	0.82[CEU][hapmap]
rs817556	0.82[CEU][hapmap]
rs817564	0.85[CEU][hapmap]
rs817565	0.88[CEU][hapmap];0.88[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs817566	1.00[CEU][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9892444	0.85[CEU][hapmap]
rs9905795	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520649	chr17:67420433-67440811	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67419800-67436600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
3	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
4	chr17:67424400-67443800	Weak transcription	Brain Angular Gyrus	brain
5	chr17:67424600-67435200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:67425400-67454600	Weak transcription	Primary B cells from cord blood	blood
7	chr17:67427000-67435600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr17:67427000-67444000	Weak transcription	Left Ventricle	heart
9	chr17:67427000-67446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr17:67427400-67441400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:67427800-67435400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:67428000-67434800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:67428200-67436000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr17:67428200-67443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr17:67430200-67435800	Weak transcription	Primary T cells from cord blood	blood
16	chr17:67430600-67443800	Weak transcription	Small Intestine	intestine
17	chr17:67430800-67434800	Weak transcription	Fetal Muscle Leg	muscle
18	chr17:67430800-67435600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr17:67430800-67436400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr17:67430800-67438800	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr17:67430800-67440600	Weak transcription	Right Atrium	heart
22	chr17:67430800-67440800	Weak transcription	Psoas Muscle	Psoas
23	chr17:67430800-67443800	Weak transcription	Colonic Mucosa	Colon
24	chr17:67430800-67443800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr17:67431200-67434800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr17:67431200-67435400	Weak transcription	Fetal Lung	lung
27	chr17:67431200-67435600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr17:67431200-67438000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr17:67431200-67438800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr17:67431200-67443800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr17:67432400-67443600	Weak transcription	Fetal Stomach	stomach
32	chr17:67432800-67437600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr17:67432800-67437800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr17:67433000-67438000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr17:67433000-67438000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr17:67433000-67438600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
37	chr17:67434200-67434400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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