Variant report

Variant	rs12943473
Chromosome Location	chr17:67445956-67445957
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11077447	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11869161	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11869348	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11871952	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12451722	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12453226	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12942981	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12946388	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1964442	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1964443	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2365493	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs817565	0.82[EUR][1000 genomes]
rs817566	0.82[EUR][1000 genomes]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
2	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
3	chr17:67425400-67454600	Weak transcription	Primary B cells from cord blood	blood
4	chr17:67427000-67446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:67440800-67458200	Weak transcription	Right Atrium	heart
6	chr17:67441400-67474600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr17:67441800-67447000	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr17:67442000-67447600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr17:67442600-67446600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr17:67444000-67447000	Weak transcription	GM12878-XiMat	blood
11	chr17:67444200-67446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr17:67444200-67446400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:67444200-67446400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr17:67444200-67446400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr17:67445000-67446400	Weak transcription	NH-A	brain
16	chr17:67445000-67447800	Weak transcription	Lung	lung
17	chr17:67445000-67449200	Weak transcription	Small Intestine	intestine
18	chr17:67445200-67446400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr17:67445200-67446400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr17:67445200-67446400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr17:67445200-67446400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr17:67445200-67446400	Weak transcription	HUVEC	blood vessel
23	chr17:67445200-67446600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr17:67445200-67446600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr17:67445200-67447000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr17:67445200-67447000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr17:67445200-67447200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr17:67445200-67447200	Weak transcription	Fetal Muscle Leg	muscle
29	chr17:67445200-67447200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr17:67445200-67447400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr17:67445200-67447600	Weak transcription	Psoas Muscle	Psoas
32	chr17:67445200-67447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr17:67445200-67447800	Weak transcription	Fetal Muscle Trunk	muscle
34	chr17:67445200-67447800	Weak transcription	Pancreas	Pancrea
35	chr17:67445200-67452400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr17:67445200-67452600	Weak transcription	Primary T cells from cord blood	blood
37	chr17:67445200-67452800	Weak transcription	Spleen	Spleen
38	chr17:67445200-67457400	Weak transcription	Left Ventricle	heart
39	chr17:67445200-67463200	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr17:67445400-67446400	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr17:67445400-67446400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr17:67445400-67446400	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr17:67445400-67446600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr17:67445400-67446600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr17:67445400-67447200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr17:67445400-67447200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr17:67445400-67447800	Weak transcription	Fetal Stomach	stomach
48	chr17:67445400-67456600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr17:67445400-67462400	Weak transcription	Fetal Intestine Small	intestine
50	chr17:67445600-67446600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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