Variant report

Variant	rs12946388
Chromosome Location	chr17:67441949-67441950
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11077447	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11869161	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11869348	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11871952	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12451722	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12453226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12942981	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12943473	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1964442	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1964443	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1972933	0.85[CEU][hapmap]
rs2365493	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6501326	0.85[CEU][hapmap]
rs707247	0.81[CEU][hapmap]
rs817564	0.86[CEU][hapmap]
rs817565	0.87[CEU][hapmap];0.95[EUR][1000 genomes]
rs817566	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9892444	0.86[CEU][hapmap]
rs9905795	0.86[CEU][hapmap]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
2	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
3	chr17:67424400-67443800	Weak transcription	Brain Angular Gyrus	brain
4	chr17:67425400-67454600	Weak transcription	Primary B cells from cord blood	blood
5	chr17:67427000-67444000	Weak transcription	Left Ventricle	heart
6	chr17:67427000-67446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr17:67428200-67443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr17:67430600-67443800	Weak transcription	Small Intestine	intestine
9	chr17:67430800-67443800	Weak transcription	Colonic Mucosa	Colon
10	chr17:67430800-67443800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr17:67431200-67443800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr17:67432400-67443600	Weak transcription	Fetal Stomach	stomach
13	chr17:67434400-67443600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr17:67436000-67443600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr17:67439000-67442400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr17:67439000-67443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr17:67439000-67443800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr17:67439000-67445000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:67439200-67443800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr17:67439400-67442000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr17:67439400-67442200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr17:67439400-67443800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr17:67439600-67444600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr17:67440000-67442200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr17:67440000-67442200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr17:67440000-67443000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr17:67440000-67443600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr17:67440200-67442200	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr17:67440400-67442000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr17:67440400-67443600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr17:67440400-67443800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr17:67440600-67443200	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr17:67440800-67442000	Enhancers	Primary T cells from cord blood	blood
34	chr17:67440800-67442600	Enhancers	HUVEC	blood vessel
35	chr17:67440800-67444800	Weak transcription	Spleen	Spleen
36	chr17:67440800-67458200	Weak transcription	Right Atrium	heart
37	chr17:67441000-67442000	Enhancers	Primary monocytes fromperipheralblood	blood
38	chr17:67441400-67442400	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr17:67441400-67442600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
40	chr17:67441400-67443800	Weak transcription	Psoas Muscle	Psoas
41	chr17:67441400-67474600	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr17:67441600-67443800	Weak transcription	Adipose Nuclei	Adipose
43	chr17:67441800-67442000	Enhancers	Duodenum Smooth Muscle	Duodenum
44	chr17:67441800-67447000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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