Variant report

Variant	rs1187773
Chromosome Location	chr1:213556275-213556276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10779600	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779602	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586612	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187770	0.81[EUR][1000 genomes]
rs1187772	0.81[EUR][1000 genomes]
rs1187780	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187781	1.00[ASN][1000 genomes]
rs1187782	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202681	0.83[EUR][1000 genomes]
rs2033596	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3010232	0.94[EUR][1000 genomes]
rs3010233	0.97[EUR][1000 genomes]
rs4655260	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655359	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753369	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1187773	INTS7	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213550600-213556600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:213554200-213556400	Enhancers	Fetal Heart	heart
3	chr1:213555400-213556600	Enhancers	Fetal Muscle Leg	muscle
4	chr1:213555400-213567000	Weak transcription	Right Atrium	heart
5	chr1:213555600-213556800	Enhancers	Fetal Muscle Trunk	muscle
6	chr1:213555800-213556400	Enhancers	Brain Germinal Matrix	brain
7	chr1:213555800-213561000	Weak transcription	Fetal Lung	lung
8	chr1:213556200-213558000	Weak transcription	HepG2	liver
9	chr1:213556200-213561600	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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