Variant report

Variant	rs1187782
Chromosome Location	chr1:213545274-213545275
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10779600	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779602	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586612	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187770	0.80[EUR][1000 genomes]
rs1187773	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187780	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187781	1.00[ASN][1000 genomes]
rs1202681	0.82[EUR][1000 genomes]
rs2033596	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3010232	0.95[EUR][1000 genomes]
rs3010233	0.98[EUR][1000 genomes]
rs4655260	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655359	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753369	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1187782	INTS7	cis	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213540600-213548000	Weak transcription	Right Atrium	heart
2	chr1:213542200-213554000	Weak transcription	Brain Germinal Matrix	brain
3	chr1:213542400-213546600	Enhancers	Liver	Liver
4	chr1:213543200-213555000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:213543400-213554600	Weak transcription	Pancreas	Pancrea
6	chr1:213544200-213547800	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:213544800-213546200	Flanking Active TSS	HepG2	liver
8	chr1:213545000-213545800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:213545000-213546200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr1:213545000-213546600	Enhancers	Fetal Intestine Small	intestine
11	chr1:213545000-213546800	Enhancers	Fetal Intestine Large	intestine
12	chr1:213545200-213545600	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:213545200-213545800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:213545200-213545800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr1:213545200-213546000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr1:213545200-213546000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:213545200-213546200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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