Variant report

Variant	rs753369
Chromosome Location	chr1:213542560-213542561
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10779600	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10779602	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586612	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187770	0.80[EUR][1000 genomes]
rs1187773	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187780	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1187781	1.00[ASN][1000 genomes]
rs1187782	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1202681	0.82[EUR][1000 genomes]
rs2033596	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3010232	0.95[EUR][1000 genomes]
rs3010233	0.98[EUR][1000 genomes]
rs4655260	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4655359	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs753369	INTS7	cis	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213540600-213545200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:213540600-213548000	Weak transcription	Right Atrium	heart
3	chr1:213541400-213542600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr1:213541400-213543200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:213541400-213544200	Enhancers	Fetal Muscle Leg	muscle
6	chr1:213542000-213544800	Enhancers	HepG2	liver
7	chr1:213542000-213545000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:213542000-213545200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr1:213542200-213554000	Weak transcription	Brain Germinal Matrix	brain
10	chr1:213542400-213546600	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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