Variant report

Variant	rs11890433
Chromosome Location	chr2:53413852-53413853
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs55730541	1.00[AMR][1000 genomes]
rs56981147	1.00[AMR][1000 genomes]
rs57585796	1.00[AMR][1000 genomes]
rs57876662	1.00[AMR][1000 genomes]
rs57906377	1.00[AMR][1000 genomes]
rs59677793	1.00[AMR][1000 genomes]
rs72894110	1.00[AMR][1000 genomes]
rs72900245	1.00[AMR][1000 genomes]
rs72904110	1.00[AMR][1000 genomes]
rs72904112	1.00[AMR][1000 genomes]
rs72904114	1.00[AMR][1000 genomes]
rs72904116	1.00[AMR][1000 genomes]
rs72904119	1.00[AMR][1000 genomes]
rs72904121	1.00[AMR][1000 genomes]
rs72906085	1.00[AMR][1000 genomes]
rs72906088	1.00[AMR][1000 genomes]
rs72906094	1.00[AMR][1000 genomes]
rs72906098	1.00[AMR][1000 genomes]
rs72906100	1.00[AMR][1000 genomes]
rs72906102	1.00[AMR][1000 genomes]
rs72908103	1.00[AMR][1000 genomes]
rs72908224	1.00[AMR][1000 genomes]
rs72908242	1.00[AMR][1000 genomes]
rs72908247	1.00[AMR][1000 genomes]
rs72908300	1.00[AMR][1000 genomes]
rs72910203	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2751897	chr2:53358205-53475338	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1011032	chr2:53384170-53433055	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53410800-53416000	Weak transcription	Fetal Brain Male	brain
2	chr2:53411000-53415800	Weak transcription	Fetal Lung	lung
3	chr2:53411200-53414200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:53411200-53414400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:53413400-53416400	Enhancers	Fetal Kidney	kidney
6	chr2:53413800-53414800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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