Variant report

Variant	rs72894110
Chromosome Location	chr2:53487779-53487780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11890433	1.00[AMR][1000 genomes]
rs55730541	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56981147	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57585796	1.00[AMR][1000 genomes]
rs57876662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57906377	1.00[AMR][1000 genomes]
rs59677793	1.00[AMR][1000 genomes]
rs72900245	1.00[AMR][1000 genomes]
rs72904110	1.00[AMR][1000 genomes]
rs72904112	1.00[AMR][1000 genomes]
rs72904114	1.00[AMR][1000 genomes]
rs72904116	1.00[AMR][1000 genomes]
rs72904119	1.00[AMR][1000 genomes]
rs72904121	1.00[AMR][1000 genomes]
rs72906085	1.00[AMR][1000 genomes]
rs72906088	1.00[AMR][1000 genomes]
rs72906094	1.00[AMR][1000 genomes]
rs72906098	1.00[AMR][1000 genomes]
rs72906100	1.00[AMR][1000 genomes]
rs72906102	1.00[AMR][1000 genomes]
rs72908103	1.00[AMR][1000 genomes]
rs72908224	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908234	0.94[AFR][1000 genomes]
rs72908242	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908247	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908300	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910203	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1013201	chr2:53473426-53553384	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv522095	chr2:53475338-53551600	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv522463	chr2:53475338-53551600	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv874142	chr2:53482626-53609363	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2014731	chr2:53487704-53488148	Weak transcription	n/a	n/a	inside rSNPs	n/a
8	esv3460802	chr2:53487779-53488057	Weak transcription	n/a	n/a	inside rSNPs	n/a
9	esv3460803	chr2:53487779-53488057	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53485800-53493000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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