Variant report
| Variant | rs72900245 |
|---|---|
| Chromosome Location | chr2:53419904-53419905 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:53417876..53420740-chr2:53421996..53424053,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs11890433 | 1.00[AMR][1000 genomes] |
| rs55730541 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56981147 | 1.00[AMR][1000 genomes] |
| rs57585796 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57876662 | 1.00[AMR][1000 genomes] |
| rs57906377 | 1.00[AMR][1000 genomes] |
| rs59677793 | 1.00[AMR][1000 genomes] |
| rs72894110 | 1.00[AMR][1000 genomes] |
| rs72904110 | 1.00[AMR][1000 genomes] |
| rs72904112 | 1.00[AMR][1000 genomes] |
| rs72904114 | 1.00[AMR][1000 genomes] |
| rs72904116 | 1.00[AMR][1000 genomes] |
| rs72904119 | 1.00[AMR][1000 genomes] |
| rs72904121 | 1.00[AMR][1000 genomes] |
| rs72906085 | 1.00[AMR][1000 genomes] |
| rs72906088 | 1.00[AMR][1000 genomes] |
| rs72906094 | 1.00[AMR][1000 genomes] |
| rs72906098 | 1.00[AMR][1000 genomes] |
| rs72906100 | 1.00[AMR][1000 genomes] |
| rs72906102 | 1.00[AMR][1000 genomes] |
| rs72908103 | 1.00[AMR][1000 genomes] |
| rs72908224 | 1.00[AMR][1000 genomes] |
| rs72908242 | 1.00[AMR][1000 genomes] |
| rs72908247 | 1.00[AMR][1000 genomes] |
| rs72908300 | 1.00[AMR][1000 genomes] |
| rs72910203 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520722 | chr2:53039770-53421015 | Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv2751897 | chr2:53358205-53475338 | Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1011032 | chr2:53384170-53433055 | Weak transcription Enhancers Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv1002145 | chr2:53387912-53832213 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 5 | nsv535718 | chr2:53387912-53832213 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:53417800-53422200 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr2:53418000-53422000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
