Variant report

Variant	rs72906088
Chromosome Location	chr2:53361860-53361861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11890433	1.00[AMR][1000 genomes]
rs55730541	1.00[AMR][1000 genomes]
rs56981147	1.00[AMR][1000 genomes]
rs57585796	1.00[AMR][1000 genomes]
rs57876662	1.00[AMR][1000 genomes]
rs57906377	1.00[AMR][1000 genomes]
rs59677793	1.00[AMR][1000 genomes]
rs72894110	1.00[AMR][1000 genomes]
rs72900245	1.00[AMR][1000 genomes]
rs72904110	1.00[AMR][1000 genomes]
rs72904112	1.00[AMR][1000 genomes]
rs72904114	1.00[AMR][1000 genomes]
rs72904116	1.00[AMR][1000 genomes]
rs72904119	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72904121	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72906085	1.00[AMR][1000 genomes]
rs72906094	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72906098	1.00[AMR][1000 genomes]
rs72906100	1.00[AMR][1000 genomes]
rs72906102	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908103	1.00[AMR][1000 genomes]
rs72908224	1.00[AMR][1000 genomes]
rs72908242	1.00[AMR][1000 genomes]
rs72908247	1.00[AMR][1000 genomes]
rs72908300	1.00[AMR][1000 genomes]
rs72910203	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520722	chr2:53039770-53421015	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1012463	chr2:53187151-53377118	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1011118	chr2:53328397-53375220	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2751897	chr2:53358205-53475338	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53338400-53362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:53357800-53362000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:53358800-53362000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr2:53360400-53362000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:53361800-53362200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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