Variant report

Variant	rs72908224
Chromosome Location	chr2:53430178-53430179
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11890433	1.00[AMR][1000 genomes]
rs55730541	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56981147	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57585796	1.00[AMR][1000 genomes]
rs57876662	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57906377	1.00[AMR][1000 genomes]
rs59677793	1.00[AMR][1000 genomes]
rs72894110	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72900245	1.00[AMR][1000 genomes]
rs72904110	1.00[AMR][1000 genomes]
rs72904112	1.00[AMR][1000 genomes]
rs72904114	1.00[AMR][1000 genomes]
rs72904116	1.00[AMR][1000 genomes]
rs72904119	1.00[AMR][1000 genomes]
rs72904121	1.00[AMR][1000 genomes]
rs72906085	1.00[AMR][1000 genomes]
rs72906088	1.00[AMR][1000 genomes]
rs72906094	1.00[AMR][1000 genomes]
rs72906098	1.00[AMR][1000 genomes]
rs72906100	1.00[AMR][1000 genomes]
rs72906102	1.00[AMR][1000 genomes]
rs72908103	1.00[AMR][1000 genomes]
rs72908234	1.00[AFR][1000 genomes]
rs72908242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908247	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908300	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910203	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751897	chr2:53358205-53475338	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1011032	chr2:53384170-53433055	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1002145	chr2:53387912-53832213	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv535718	chr2:53387912-53832213	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:53429000-53430200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr2:53430000-53431000	Weak transcription	Fetal Lung	lung
3	chr2:53430000-53434400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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