Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11908636	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541230	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16985165	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16985177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16985180	1.00[EUR][1000 genomes]
rs2211468	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6036353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6036357	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048647	1.00[EUR][1000 genomes]
rs6048653	1.00[EUR][1000 genomes]
rs6048664	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048669	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6048682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60797935	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6137826	1.00[EUR][1000 genomes]
rs6137831	1.00[EUR][1000 genomes]
rs6137833	1.00[EUR][1000 genomes]
rs6137834	1.00[EUR][1000 genomes]
rs73315019	1.00[EUR][1000 genomes]
rs8118517	1.00[EUR][1000 genomes]
rs8118610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv458948	chr20:23234699-23292849	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv585721	chr20:23234699-23292849	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23253200-23274400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23253800-23267000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr20:23262200-23263400	Enhancers	HUVEC	blood vessel
4	chr20:23262200-23264000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr20:23262400-23263400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:23262600-23263600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr20:23262600-23263600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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