Variant report

Variant	rs6137831
Chromosome Location	chr20:23091979-23091980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23079507..23082069-chr20:23090544..23092164,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11907833	1.00[EUR][1000 genomes]
rs11908636	1.00[EUR][1000 genomes]
rs1541230	1.00[EUR][1000 genomes]
rs16985165	1.00[EUR][1000 genomes]
rs16985177	1.00[EUR][1000 genomes]
rs16985180	1.00[EUR][1000 genomes]
rs2211468	1.00[EUR][1000 genomes]
rs6036353	1.00[EUR][1000 genomes]
rs6036357	1.00[EUR][1000 genomes]
rs6048532	1.00[EUR][1000 genomes]
rs6048647	1.00[EUR][1000 genomes]
rs6048653	1.00[EUR][1000 genomes]
rs6048664	1.00[EUR][1000 genomes]
rs6048669	1.00[EUR][1000 genomes]
rs6048680	1.00[EUR][1000 genomes]
rs6048682	1.00[EUR][1000 genomes]
rs60797935	1.00[EUR][1000 genomes]
rs6137826	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137833	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137834	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6137835	0.92[CHD][hapmap];0.88[GIH][hapmap]
rs6515301	1.00[EUR][1000 genomes]
rs73315019	1.00[EUR][1000 genomes]
rs8118517	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8118610	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2762066	chr20:23082036-23092700	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23072800-23092000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23085800-23114600	Enhancers	Placenta	Placenta
3	chr20:23086200-23092800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr20:23086200-23094200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr20:23087000-23093800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr20:23087600-23092000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr20:23088000-23100000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr20:23088200-23094000	Weak transcription	Primary B cells from cord blood	blood
9	chr20:23088200-23094800	Weak transcription	Right Atrium	heart
10	chr20:23088200-23095000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr20:23088200-23096800	Weak transcription	Esophagus	oesophagus
12	chr20:23088400-23093600	Weak transcription	Adipose Nuclei	Adipose
13	chr20:23088400-23094400	Weak transcription	Left Ventricle	heart
14	chr20:23088800-23093400	Weak transcription	Fetal Muscle Leg	muscle
15	chr20:23089600-23094600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr20:23090000-23094800	Weak transcription	Lung	lung
17	chr20:23090400-23093400	Weak transcription	Spleen	Spleen
18	chr20:23091200-23100600	Enhancers	Dnd41	blood
19	chr20:23091400-23092000	Enhancers	Fetal Thymus	thymus
20	chr20:23091600-23092200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr20:23091600-23093000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr20:23091800-23093400	Weak transcription	K562	blood

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