Variant report

Variant	rs73315019
Chromosome Location	chr20:23226567-23226568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23226182..23226684-chr20:23321088..23321781,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11907833	1.00[EUR][1000 genomes]
rs11908636	1.00[EUR][1000 genomes]
rs1541230	1.00[EUR][1000 genomes]
rs16985165	1.00[EUR][1000 genomes]
rs16985177	1.00[EUR][1000 genomes]
rs16985180	1.00[EUR][1000 genomes]
rs2211468	1.00[EUR][1000 genomes]
rs6036353	1.00[EUR][1000 genomes]
rs6036357	1.00[EUR][1000 genomes]
rs6048532	1.00[EUR][1000 genomes]
rs6048647	1.00[EUR][1000 genomes]
rs6048653	1.00[EUR][1000 genomes]
rs6048664	1.00[EUR][1000 genomes]
rs6048669	1.00[EUR][1000 genomes]
rs6048680	1.00[EUR][1000 genomes]
rs6048682	1.00[EUR][1000 genomes]
rs60797935	1.00[EUR][1000 genomes]
rs6137826	1.00[EUR][1000 genomes]
rs6137831	1.00[EUR][1000 genomes]
rs6137833	1.00[EUR][1000 genomes]
rs6137834	1.00[EUR][1000 genomes]
rs6515301	1.00[EUR][1000 genomes]
rs8118517	1.00[EUR][1000 genomes]
rs8118610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912817	chr20:23127661-23240969	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1066734	chr20:23170094-23277628	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23214200-23241000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:23223600-23226600	Weak transcription	Fetal Muscle Leg	muscle
3	chr20:23224600-23227400	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr20:23225000-23229400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr20:23225200-23227200	Weak transcription	NHLF	lung
6	chr20:23225400-23226800	Enhancers	Right Atrium	heart
7	chr20:23225400-23227400	Weak transcription	Ovary	ovary
8	chr20:23225400-23227400	Weak transcription	HSMMtube	muscle
9	chr20:23225400-23229400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr20:23225400-23229400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr20:23225600-23227400	Weak transcription	HSMM	muscle
12	chr20:23225600-23235600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr20:23225800-23226600	Enhancers	Colonic Mucosa	Colon
14	chr20:23225800-23227200	Enhancers	Brain Hippocampus Middle	brain
15	chr20:23225800-23227200	Enhancers	Right Ventricle	heart
16	chr20:23225800-23228800	Enhancers	Spleen	Spleen
17	chr20:23226000-23226600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr20:23226000-23226600	Enhancers	Esophagus	oesophagus
19	chr20:23226000-23226600	Enhancers	Pancreas	Pancrea
20	chr20:23226000-23226800	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr20:23226000-23226800	Bivalent Enhancer	Adipose Nuclei	Adipose
22	chr20:23226000-23226800	Enhancers	Gastric	stomach
23	chr20:23226000-23226800	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr20:23226000-23227000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr20:23226000-23227000	Enhancers	Left Ventricle	heart
26	chr20:23226000-23227200	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr20:23226000-23227400	Weak transcription	Placenta	Placenta
28	chr20:23226000-23227600	Enhancers	Stomach Mucosa	stomach
29	chr20:23226000-23229200	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr20:23226200-23226600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr20:23226200-23226800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr20:23226200-23226800	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr20:23226200-23227000	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr20:23226200-23229400	Enhancers	GM12878-XiMat	blood
35	chr20:23226400-23227000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr20:23226400-23227400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr20:23226400-23227600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr20:23226400-23228600	Enhancers	Lung	lung
39	chr20:23226400-23234200	Weak transcription	Fetal Kidney	kidney

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