Variant report

Variant	rs6137833
Chromosome Location	chr20:23099642-23099643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:23099426..23103463-chr20:23105068..23107847,3	K562	blood:
2	chr20:23098919..23101033-chr20:23112004..23114138,2	K562	blood:

Variant related genes	Relation type
ENSG00000233746	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11907833	1.00[EUR][1000 genomes]
rs11908636	1.00[EUR][1000 genomes]
rs1541230	1.00[EUR][1000 genomes]
rs16985165	1.00[EUR][1000 genomes]
rs16985177	1.00[EUR][1000 genomes]
rs16985180	1.00[EUR][1000 genomes]
rs2211468	1.00[EUR][1000 genomes]
rs6036353	1.00[EUR][1000 genomes]
rs6036357	1.00[EUR][1000 genomes]
rs6048532	1.00[EUR][1000 genomes]
rs6048647	1.00[EUR][1000 genomes]
rs6048653	1.00[EUR][1000 genomes]
rs6048664	1.00[EUR][1000 genomes]
rs6048669	1.00[EUR][1000 genomes]
rs6048680	1.00[EUR][1000 genomes]
rs6048682	1.00[EUR][1000 genomes]
rs60797935	1.00[EUR][1000 genomes]
rs6137826	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6137831	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6137834	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6515301	1.00[EUR][1000 genomes]
rs73315019	1.00[EUR][1000 genomes]
rs8118517	1.00[EUR][1000 genomes]
rs8118610	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23085800-23114600	Enhancers	Placenta	Placenta
2	chr20:23088000-23100000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr20:23091200-23100600	Enhancers	Dnd41	blood
4	chr20:23093000-23103200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr20:23095200-23100200	Weak transcription	Right Atrium	heart
6	chr20:23095200-23100400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr20:23095600-23100000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:23096000-23102600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr20:23096200-23099800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr20:23097200-23100000	Enhancers	Lung	lung
11	chr20:23097200-23100000	Enhancers	GM12878-XiMat	blood
12	chr20:23097200-23100800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr20:23097200-23102000	Enhancers	Fetal Muscle Leg	muscle
14	chr20:23097400-23100000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr20:23097400-23100000	Weak transcription	Brain Hippocampus Middle	brain
16	chr20:23097400-23100200	Weak transcription	Fetal Thymus	thymus
17	chr20:23097600-23100200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr20:23097600-23101400	Weak transcription	K562	blood
19	chr20:23097600-23110200	Weak transcription	Pancreas	Pancrea
20	chr20:23097800-23100000	Weak transcription	HUVEC	blood vessel
21	chr20:23097800-23100400	Enhancers	Fetal Muscle Trunk	muscle
22	chr20:23098000-23099800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr20:23098000-23100200	Weak transcription	NHEK	skin
24	chr20:23098000-23106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr20:23098800-23100400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr20:23098800-23100800	Weak transcription	Right Ventricle	heart
27	chr20:23098800-23101600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr20:23098800-23102000	Enhancers	Spleen	Spleen
29	chr20:23099200-23101600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr20:23099200-23102000	Enhancers	Esophagus	oesophagus
31	chr20:23099400-23100200	Enhancers	Primary B cells from cord blood	blood
32	chr20:23099400-23100800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr20:23099600-23099800	Enhancers	Gastric	stomach
34	chr20:23099600-23099800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr20:23099600-23100400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr20:23099600-23100600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr20:23099600-23101400	Enhancers	Adipose Nuclei	Adipose
38	chr20:23099600-23101400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr20:23099600-23101800	Enhancers	Left Ventricle	heart
40	chr20:23099600-23104600	Weak transcription	Placenta Amnion	Placenta Amnion

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