Variant report
| Variant | rs11908636 |
|---|---|
| Chromosome Location | chr20:23254609-23254610 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11906751 | 1.00[ASN][1000 genomes] |
| rs11907833 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1541230 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs16985165 | 1.00[EUR][1000 genomes] |
| rs16985177 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16985180 | 1.00[EUR][1000 genomes] |
| rs2211468 | 1.00[EUR][1000 genomes] |
| rs35419581 | 0.81[ASN][1000 genomes] |
| rs4425157 | 0.93[ASN][1000 genomes] |
| rs6036353 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6036357 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6048647 | 1.00[EUR][1000 genomes] |
| rs6048653 | 1.00[EUR][1000 genomes] |
| rs6048664 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6048669 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6048680 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6048682 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60797935 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6137826 | 1.00[EUR][1000 genomes] |
| rs6137831 | 1.00[EUR][1000 genomes] |
| rs6137833 | 1.00[EUR][1000 genomes] |
| rs6137834 | 1.00[EUR][1000 genomes] |
| rs73315019 | 1.00[EUR][1000 genomes] |
| rs8118517 | 1.00[EUR][1000 genomes] |
| rs8118610 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1066734 | chr20:23170094-23277628 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription | Chromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv458948 | chr20:23234699-23292849 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv585721 | chr20:23234699-23292849 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | Chromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:23253200-23274400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr20:23253800-23267000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
