Variant report
| Variant | rs11915485 |
|---|---|
| Chromosome Location | chr3:157331385-157331386 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1027083 | 0.86[EUR][1000 genomes] |
| rs10804780 | 0.81[EUR][1000 genomes] |
| rs10936094 | 0.81[EUR][1000 genomes] |
| rs10936096 | 0.81[EUR][1000 genomes] |
| rs11719499 | 1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11924940 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11929327 | 0.81[EUR][1000 genomes] |
| rs13080182 | 0.81[EUR][1000 genomes] |
| rs4381894 | 0.81[EUR][1000 genomes] |
| rs4414799 | 0.81[EUR][1000 genomes] |
| rs4680386 | 0.81[EUR][1000 genomes] |
| rs4680387 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4680388 | 0.81[EUR][1000 genomes] |
| rs4680391 | 0.86[EUR][1000 genomes] |
| rs62278746 | 0.93[EUR][1000 genomes] |
| rs67734933 | 0.93[EUR][1000 genomes] |
| rs951633 | 0.94[EUR][1000 genomes] |
| rs962110 | 0.94[EUR][1000 genomes] |
| rs9823329 | 0.81[EUR][1000 genomes] |
| rs9837055 | 0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9838949 | 0.81[EUR][1000 genomes] |
| rs9839151 | 0.81[EUR][1000 genomes] |
| rs9850567 | 0.95[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9854256 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9854744 | 0.81[EUR][1000 genomes] |
| rs9856696 | 0.81[EUR][1000 genomes] |
| rs9863208 | 0.83[EUR][1000 genomes] |
| rs9867899 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829767 | chr3:157306411-157490444 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv4081 | chr3:157318466-157347655 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:157324600-157336400 | Weak transcription | Fetal Muscle Leg | muscle |
| 2 | chr3:157328200-157335600 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
