Variant report

Variant	rs9867899
Chromosome Location	chr3:157357085-157357086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1027083	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10804780	0.80[EUR][1000 genomes]
rs10936094	0.80[EUR][1000 genomes]
rs10936096	0.81[EUR][1000 genomes]
rs11719499	0.84[EUR][1000 genomes]
rs11915485	0.90[EUR][1000 genomes]
rs11921638	0.82[EUR][1000 genomes]
rs11924940	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11929327	0.80[EUR][1000 genomes]
rs13080182	0.80[EUR][1000 genomes]
rs4381894	0.80[EUR][1000 genomes]
rs4414799	0.80[EUR][1000 genomes]
rs4680386	0.80[EUR][1000 genomes]
rs4680387	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4680388	0.80[EUR][1000 genomes]
rs4680391	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62278746	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67734933	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs951633	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs962110	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9823329	0.80[EUR][1000 genomes]
rs9837055	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9838813	0.81[EUR][1000 genomes]
rs9838949	0.80[EUR][1000 genomes]
rs9839151	0.80[EUR][1000 genomes]
rs9850567	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9854132	0.81[EUR][1000 genomes]
rs9854256	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9854744	0.80[EUR][1000 genomes]
rs9856696	0.80[EUR][1000 genomes]
rs9863208	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9876529	0.81[EUR][1000 genomes]
rs9876844	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1007903	chr3:157351662-157383667	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157356800-157357800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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