Variant report

Variant	rs962110
Chromosome Location	chr3:157341500-157341501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:157338080..157340349-chr3:157341283..157344267,3	K562	blood:
2	chr3:157338817..157342476-chr3:157350629..157354187,3	K562	blood:
3	chr3:157338817..157341754-chr3:157350629..157353502,2	K562	blood:
4	chr3:157333608..157336028-chr3:157339790..157343103,3	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1027083	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10804780	0.84[EUR][1000 genomes]
rs10936094	0.84[EUR][1000 genomes]
rs10936096	0.83[EUR][1000 genomes]
rs11709879	0.81[EUR][1000 genomes]
rs11709949	0.82[EUR][1000 genomes]
rs11719499	0.88[EUR][1000 genomes]
rs11915485	0.94[EUR][1000 genomes]
rs11921638	0.84[EUR][1000 genomes]
rs11924940	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11929327	0.84[EUR][1000 genomes]
rs13080182	0.84[EUR][1000 genomes]
rs4381894	0.84[EUR][1000 genomes]
rs4414799	0.84[EUR][1000 genomes]
rs4680386	0.84[EUR][1000 genomes]
rs4680387	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4680388	0.84[EUR][1000 genomes]
rs4680391	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62278746	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67734933	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs951633	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9823329	0.84[EUR][1000 genomes]
rs9837055	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9838813	0.85[EUR][1000 genomes]
rs9838949	0.84[EUR][1000 genomes]
rs9839151	0.84[EUR][1000 genomes]
rs9850567	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9854132	0.85[EUR][1000 genomes]
rs9854256	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9854744	0.84[EUR][1000 genomes]
rs9856696	0.84[EUR][1000 genomes]
rs9863208	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9867899	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9876529	0.85[EUR][1000 genomes]
rs9876844	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv4081	chr3:157318466-157347655	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2427927	chr3:157338497-157343574	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2762351	chr3:157338661-157341682	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv441845	chr3:157339388-157341682	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3369725	chr3:157339408-157343323	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157338200-157342400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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