Variant report

Variant	rs9863208
Chromosome Location	chr3:157386694-157386695
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1027083	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11915485	0.83[EUR][1000 genomes]
rs11924940	0.83[EUR][1000 genomes]
rs4680387	0.83[EUR][1000 genomes]
rs4680391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62278746	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67734933	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs951633	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs962110	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9837055	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9850567	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9854256	0.85[EUR][1000 genomes]
rs9867899	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9863208	CCNL1	cis	cerebellum	SCAN
rs9863208	VEPH1	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157386400-157386800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:157386600-157388000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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