Variant report

Variant	rs9850567
Chromosome Location	chr3:157336588-157336589
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:157335809..157336775-chr3:157417803..157418800,5	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1027083	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10804780	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10936094	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10936096	0.85[EUR][1000 genomes]
rs11709879	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11709949	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11719499	0.89[EUR][1000 genomes]
rs11915485	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11921638	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11924940	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11929327	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13080182	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4381894	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4414799	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4680386	0.88[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4680387	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4680388	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4680391	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62278746	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67734933	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs951633	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs962110	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9823329	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9837055	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9838813	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9838949	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9839151	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9854132	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9854256	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9854744	0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9856696	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9863208	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9867899	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9876529	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9876844	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829767	chr3:157306411-157490444	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv4081	chr3:157318466-157347655	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157335400-157337200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr3:157335600-157336600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:157335800-157336800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:157336000-157336600	Enhancers	Brain Germinal Matrix	brain
5	chr3:157336200-157336600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr3:157336200-157336600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:157336200-157336600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr3:157336200-157336600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:157336200-157336600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr3:157336200-157336600	Enhancers	NHDF-Ad	bronchial
11	chr3:157336400-157336600	Bivalent Enhancer	Hela-S3	cervix
12	chr3:157336400-157336600	Bivalent Enhancer	K562	blood
13	chr3:157336400-157337400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:157336400-157337400	Enhancers	Fetal Muscle Leg	muscle
15	chr3:157336400-157337600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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