Variant report

Variant	rs11926807
Chromosome Location	chr3:113716380-113716381
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13061658	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13064372	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13064466	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13069900	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13070378	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13071100	0.96[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13086657	0.96[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13087347	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13096290	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1386478	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap]
rs1487265	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2242316	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2632241	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2632259	0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs324553	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs324555	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs324556	0.89[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35745351	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6775521	0.82[LWK][hapmap]
rs6809991	0.82[LWK][hapmap]
rs7620955	0.80[EUR][1000 genomes]
rs7631864	0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7638536	0.82[LWK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11926807	KTELC1	cis	parietal	SCAN

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113668400-113724200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:113673400-113761000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:113674000-113743800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr3:113676400-113723400	Weak transcription	Brain Substantia Nigra	brain
5	chr3:113678000-113724400	Weak transcription	Pancreas	Pancrea
6	chr3:113678000-113731400	Weak transcription	Gastric	stomach
7	chr3:113683000-113723600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr3:113692600-113723400	Weak transcription	Fetal Kidney	kidney
9	chr3:113693200-113723800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr3:113693200-113724200	Weak transcription	A549	lung
11	chr3:113693400-113724000	Weak transcription	Colonic Mucosa	Colon
12	chr3:113693600-113723200	Weak transcription	Fetal Stomach	stomach
13	chr3:113693600-113724600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:113693600-113731200	Weak transcription	Spleen	Spleen
15	chr3:113693800-113731400	Weak transcription	Fetal Brain Female	brain
16	chr3:113694000-113729800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:113694400-113723400	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:113694800-113726000	Weak transcription	Fetal Brain Male	brain
19	chr3:113695400-113725400	Weak transcription	NHDF-Ad	bronchial
20	chr3:113696200-113723600	Weak transcription	HSMMtube	muscle
21	chr3:113697000-113722200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr3:113697200-113723400	Weak transcription	Lung	lung
23	chr3:113697200-113724200	Weak transcription	Right Ventricle	heart
24	chr3:113697600-113726400	Weak transcription	Brain Germinal Matrix	brain
25	chr3:113698000-113718000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:113698200-113717400	Weak transcription	Brain Anterior Caudate	brain
27	chr3:113698200-113722800	Weak transcription	Fetal Muscle Leg	muscle
28	chr3:113698400-113723200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:113699200-113724000	Weak transcription	Liver	Liver
30	chr3:113699400-113723800	Weak transcription	Brain Angular Gyrus	brain
31	chr3:113699600-113722200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr3:113699600-113722800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:113699600-113723400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr3:113699600-113724400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr3:113699600-113753200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr3:113700000-113717600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:113701400-113724200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr3:113704400-113724600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:113704800-113721000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:113704800-113722800	Weak transcription	Left Ventricle	heart
41	chr3:113705000-113723400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:113705400-113723600	Weak transcription	Brain Hippocampus Middle	brain
43	chr3:113705600-113722000	Weak transcription	Fetal Intestine Large	intestine
44	chr3:113705800-113717200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr3:113705800-113717800	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:113705800-113720000	Weak transcription	Primary T cells from cord blood	blood
47	chr3:113705800-113722400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr3:113705800-113723400	Weak transcription	Fetal Lung	lung
49	chr3:113705800-113723600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr3:113706800-113723400	Weak transcription	Ovary	ovary

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