Variant report

Variant	rs324555
Chromosome Location	chr3:113730108-113730109
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:113721161..113722850-chr3:113729586..113731336,2	MCF-7	breast:
2	chr3:113729387..113732523-chr3:113733016..113736700,3	K562	blood:
3	chr3:113729387..113731058-chr3:113734218..113736700,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11926807	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13061658	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13064372	0.91[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13064466	0.91[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13069900	0.91[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13070378	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13071100	0.91[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13086657	0.91[CEU][hapmap];0.85[CHB][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13087347	1.00[ASW][hapmap];0.91[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13096290	0.96[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1386478	0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[GIH][hapmap];0.80[TSI][hapmap]
rs1487265	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2242316	0.91[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2632241	1.00[ASW][hapmap];0.95[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2632259	0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324553	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs324556	0.89[ASW][hapmap];0.87[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35745351	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6775521	0.82[LWK][hapmap]
rs7620955	0.83[EUR][1000 genomes]
rs7631864	0.91[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.81[GIH][hapmap];0.89[JPT][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113673400-113761000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:113674000-113743800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr3:113678000-113731400	Weak transcription	Gastric	stomach
4	chr3:113693600-113731200	Weak transcription	Spleen	Spleen
5	chr3:113693800-113731400	Weak transcription	Fetal Brain Female	brain
6	chr3:113699600-113753200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr3:113710000-113738600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr3:113715000-113762600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:113721600-113731000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:113723000-113756000	Weak transcription	Small Intestine	intestine
11	chr3:113723200-113740400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr3:113724800-113730400	Weak transcription	Colonic Mucosa	Colon
13	chr3:113724800-113731200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr3:113724800-113737400	Weak transcription	HSMMtube	muscle
15	chr3:113724800-113755600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr3:113724800-113763400	Weak transcription	Fetal Lung	lung
17	chr3:113724800-113774400	Weak transcription	Aorta	Aorta
18	chr3:113725000-113730600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:113725000-113730600	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:113725000-113731600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:113725000-113733600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:113725000-113752400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr3:113725000-113752400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:113725000-113752600	Weak transcription	Adipose Nuclei	Adipose
25	chr3:113725000-113753400	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr3:113725000-113755000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr3:113725000-113759200	Weak transcription	Brain Substantia Nigra	brain
28	chr3:113725000-113762000	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr3:113725200-113730400	Weak transcription	Liver	Liver
30	chr3:113725200-113730600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:113725200-113731000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr3:113725200-113732800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:113725200-113734000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr3:113725200-113736000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:113725200-113742400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr3:113725200-113752200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr3:113725200-113757600	Weak transcription	Esophagus	oesophagus
38	chr3:113725200-113759400	Weak transcription	Brain Hippocampus Middle	brain
39	chr3:113725200-113760000	Weak transcription	Fetal Stomach	stomach
40	chr3:113725200-113762200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr3:113725200-113767000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:113725200-113774200	Weak transcription	Rectal Smooth Muscle	rectum
43	chr3:113725200-113774600	Weak transcription	Primary hematopoietic stem cells	blood
44	chr3:113725200-113774800	Weak transcription	Pancreas	Pancrea
45	chr3:113725400-113731200	Weak transcription	Right Ventricle	heart
46	chr3:113725400-113732800	Weak transcription	Fetal Intestine Large	intestine
47	chr3:113725400-113733000	Weak transcription	Fetal Intestine Small	intestine
48	chr3:113725400-113734000	Weak transcription	Brain Anterior Caudate	brain
49	chr3:113725400-113760600	Weak transcription	Lung	lung
50	chr3:113725400-113774400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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