Variant report

Variant	rs13070378
Chromosome Location	chr3:113793682-113793683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11926807	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13061658	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs13064372	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13064466	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13069900	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13071100	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13086657	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13087347	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13094677	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13096290	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1487265	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2242316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2632241	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2632259	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs324553	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs324555	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs324556	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35745351	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7620955	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7631864	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877352	chr3:113744010-113870078	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv877353	chr3:113789029-113879562	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:113776200-113795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:113776400-113794800	Weak transcription	Aorta	Aorta
3	chr3:113776400-113806800	Weak transcription	Stomach Mucosa	stomach
4	chr3:113776600-113795600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:113776800-113795200	Weak transcription	Brain Angular Gyrus	brain
6	chr3:113776800-113798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr3:113777800-113794400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:113782800-113806600	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr3:113782800-113807600	Strong transcription	Primary T cells from cord blood	blood
10	chr3:113783000-113806400	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr3:113783000-113807000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr3:113783000-113807000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:113783000-113808200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr3:113783000-113808400	Strong transcription	Primary B cells from cord blood	blood
15	chr3:113783200-113801000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:113783200-113807000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr3:113783200-113807000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:113783400-113796600	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr3:113783400-113805600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr3:113783400-113807000	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr3:113783400-113807200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:113783600-113805000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:113783600-113806800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr3:113783600-113806800	Strong transcription	Duodenum Mucosa	Duodenum
25	chr3:113783600-113807000	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr3:113783600-113807200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr3:113783600-113807800	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:113783600-113807800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:113783800-113806800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr3:113783800-113806800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:113783800-113807000	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr3:113784000-113795000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr3:113784000-113797600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr3:113784000-113801000	Strong transcription	Fetal Muscle Trunk	muscle
35	chr3:113784000-113806200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr3:113784000-113806800	Strong transcription	Fetal Intestine Large	intestine
37	chr3:113784000-113806800	Strong transcription	Dnd41	blood
38	chr3:113784000-113807800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr3:113784200-113797600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:113784200-113805800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr3:113784200-113806200	Strong transcription	GM12878-XiMat	blood
42	chr3:113784200-113806800	Strong transcription	Liver	Liver
43	chr3:113784200-113807000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr3:113784400-113797400	Strong transcription	Adipose Nuclei	Adipose
45	chr3:113784400-113802200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr3:113784400-113805600	Strong transcription	HMEC	breast
47	chr3:113784400-113807000	Strong transcription	A549	lung
48	chr3:113784600-113797600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr3:113786600-113797600	Strong transcription	NHEK	skin
50	chr3:113786600-113799400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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