Variant report

Variant	rs11928653
Chromosome Location	chr3:119483752-119483753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10511395	1.00[ASN][1000 genomes]
rs1054191	1.00[ASN][1000 genomes]
rs11918155	1.00[ASN][1000 genomes]
rs11925762	1.00[ASN][1000 genomes]
rs11929668	1.00[ASN][1000 genomes]
rs16830076	1.00[ASN][1000 genomes]
rs16830097	1.00[ASN][1000 genomes]
rs2461818	1.00[ASN][1000 genomes]
rs56822345	1.00[ASN][1000 genomes]
rs57450016	1.00[ASN][1000 genomes]
rs60971947	1.00[ASN][1000 genomes]
rs61733986	1.00[ASN][1000 genomes]
rs62264684	1.00[ASN][1000 genomes]
rs6438549	1.00[ASN][1000 genomes]
rs66588775	1.00[ASN][1000 genomes]
rs66802265	1.00[ASN][1000 genomes]
rs66858682	1.00[ASN][1000 genomes]
rs6770095	1.00[ASN][1000 genomes]
rs73175814	1.00[ASN][1000 genomes]
rs73175826	1.00[ASN][1000 genomes]
rs73192016	1.00[ASN][1000 genomes]
rs73192035	1.00[ASN][1000 genomes]
rs73192043	1.00[ASN][1000 genomes]
rs7638068	1.00[ASN][1000 genomes]
rs7638261	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119473800-119484800	Weak transcription	Pancreas	Pancrea
2	chr3:119474400-119493400	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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