Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10511395	1.00[ASN][1000 genomes]
rs1054191	1.00[ASN][1000 genomes]
rs11918155	1.00[ASN][1000 genomes]
rs11925762	1.00[ASN][1000 genomes]
rs11928653	1.00[ASN][1000 genomes]
rs11929668	1.00[ASN][1000 genomes]
rs16830076	0.83[GIH][hapmap];1.00[ASN][1000 genomes]
rs16830097	0.85[CEU][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap];1.00[ASN][1000 genomes]
rs2461818	1.00[ASN][1000 genomes]
rs56822345	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57450016	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60971947	1.00[ASN][1000 genomes]
rs61733986	1.00[ASN][1000 genomes]
rs62264684	1.00[ASN][1000 genomes]
rs6438549	1.00[ASN][1000 genomes]
rs66588775	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66802265	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66858682	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770095	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs73175814	1.00[ASN][1000 genomes]
rs73175826	1.00[ASN][1000 genomes]
rs73192016	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192035	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192040	0.99[EUR][1000 genomes]
rs73192043	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638068	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460834	chr3:119384163-119458851	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv591390	chr3:119384163-119458851	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv591391	chr3:119403145-119442572	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119422200-119458200	Weak transcription	Aorta	Aorta
2	chr3:119422600-119435600	Weak transcription	Pancreas	Pancrea
3	chr3:119422800-119440000	Weak transcription	Brain Angular Gyrus	brain
4	chr3:119423000-119432800	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:119423000-119433800	Weak transcription	Fetal Intestine Small	intestine
6	chr3:119423000-119434000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:119423000-119435000	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:119423000-119463000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:119423000-119464400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:119423200-119436000	Weak transcription	Brain Anterior Caudate	brain
11	chr3:119423200-119464200	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:119423200-119471600	Weak transcription	Fetal Kidney	kidney
13	chr3:119423400-119435800	Weak transcription	Ovary	ovary
14	chr3:119423400-119458200	Weak transcription	Brain Substantia Nigra	brain
15	chr3:119423800-119430600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:119423800-119449000	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr3:119428800-119469200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:119429600-119430800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:119429600-119434200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:119430000-119431000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search: