Variant report

Variant	rs73192035
Chromosome Location	chr3:119412285-119412286
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10511395	1.00[ASN][1000 genomes]
rs1054191	1.00[ASN][1000 genomes]
rs11918155	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11925762	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11928653	1.00[ASN][1000 genomes]
rs11929668	1.00[ASN][1000 genomes]
rs16830076	1.00[ASN][1000 genomes]
rs16830097	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2461818	1.00[ASN][1000 genomes]
rs56822345	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57450016	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60971947	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61733986	1.00[ASN][1000 genomes]
rs62264684	1.00[ASN][1000 genomes]
rs6438549	1.00[ASN][1000 genomes]
rs66588775	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66802265	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66858682	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6770095	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175814	1.00[ASN][1000 genomes]
rs73175826	1.00[ASN][1000 genomes]
rs73192016	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73192040	0.87[EUR][1000 genomes]
rs73192043	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7638068	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7638261	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv460834	chr3:119384163-119458851	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv591390	chr3:119384163-119458851	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3358659	chr3:119402929-119414857	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv591391	chr3:119403145-119442572	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119406000-119421400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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