Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:119517202..119519135-chr3:119522391..119525138,2	K562	blood:
2	chr3:119523169..119526379-chr3:119529849..119532497,4	MCF-7	breast:
3	chr3:119517202..119520046-chr3:119522391..119525743,3	K562	blood:

Variant related genes	Relation type
ENSG00000144852	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511395	1.00[ASN][1000 genomes]
rs1054191	1.00[ASN][1000 genomes]
rs11918155	1.00[ASN][1000 genomes]
rs11925762	1.00[ASN][1000 genomes]
rs11928653	1.00[ASN][1000 genomes]
rs11929668	1.00[ASN][1000 genomes]
rs13059232	0.89[LWK][hapmap];1.00[YRI][hapmap]
rs13066380	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16830076	1.00[ASN][1000 genomes]
rs16830097	1.00[ASN][1000 genomes]
rs16830505	0.93[CEU][hapmap]
rs2461818	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2461821	0.89[LWK][hapmap];1.00[YRI][hapmap]
rs2461822	0.89[LWK][hapmap];1.00[YRI][hapmap]
rs2461823	0.89[LWK][hapmap];1.00[YRI][hapmap]
rs56822345	1.00[ASN][1000 genomes]
rs57450016	1.00[ASN][1000 genomes]
rs60971947	1.00[ASN][1000 genomes]
rs61733986	1.00[ASN][1000 genomes]
rs62264684	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6438548	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs66588775	1.00[ASN][1000 genomes]
rs66802265	1.00[ASN][1000 genomes]
rs66858682	1.00[ASN][1000 genomes]
rs6770095	1.00[ASN][1000 genomes]
rs73175814	1.00[ASN][1000 genomes]
rs73175826	1.00[ASN][1000 genomes]
rs73192016	1.00[ASN][1000 genomes]
rs73192035	1.00[ASN][1000 genomes]
rs73192043	1.00[ASN][1000 genomes]
rs7638068	1.00[ASN][1000 genomes]
rs7638261	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119514400-119526800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:119515000-119526000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:119515400-119526000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:119515400-119527200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:119515400-119528600	Weak transcription	Colonic Mucosa	Colon
6	chr3:119515800-119527400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:119516800-119534600	Weak transcription	HepG2	liver
8	chr3:119521000-119525200	Weak transcription	Fetal Intestine Small	intestine
9	chr3:119521400-119525800	Weak transcription	Liver	Liver

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