Variant report

Variant	rs11945797
Chromosome Location	chr4:129976963-129976964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs10518540	0.83[ASN][1000 genomes]
rs11934130	1.00[ASN][1000 genomes]
rs11935616	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11936845	1.00[ASN][1000 genomes]
rs11940367	1.00[ASN][1000 genomes]
rs11944075	1.00[ASN][1000 genomes]
rs11944782	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11945943	1.00[ASN][1000 genomes]
rs1446997	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1446998	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17013912	0.83[ASN][1000 genomes]
rs17013921	0.83[ASN][1000 genomes]
rs17013948	0.83[ASN][1000 genomes]
rs17013950	0.83[ASN][1000 genomes]
rs17013952	0.83[ASN][1000 genomes]
rs17013957	0.83[ASN][1000 genomes]
rs17013959	0.83[ASN][1000 genomes]
rs17013962	0.83[ASN][1000 genomes]
rs1807772	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2167243	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34610325	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3765056	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4323125	1.00[ASN][1000 genomes]
rs55722445	1.00[ASN][1000 genomes]
rs55726726	0.83[ASN][1000 genomes]
rs55764329	1.00[ASN][1000 genomes]
rs56133600	0.83[ASN][1000 genomes]
rs56736556	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56873035	1.00[ASN][1000 genomes]
rs57211895	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57821290	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58053026	1.00[ASN][1000 genomes]
rs58916388	1.00[ASN][1000 genomes]
rs58952520	1.00[ASN][1000 genomes]
rs59003275	1.00[ASN][1000 genomes]
rs59089843	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs59443911	1.00[ASN][1000 genomes]
rs60404916	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60617520	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs60927243	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61177405	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61264206	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61467458	0.83[ASN][1000 genomes]
rs61491906	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72922045	1.00[ASN][1000 genomes]
rs72922049	1.00[ASN][1000 genomes]
rs72922051	1.00[ASN][1000 genomes]
rs72922052	1.00[ASN][1000 genomes]
rs72922056	1.00[ASN][1000 genomes]
rs72922058	1.00[ASN][1000 genomes]
rs72922062	1.00[ASN][1000 genomes]
rs72922082	1.00[ASN][1000 genomes]
rs72922083	0.86[ASN][1000 genomes]
rs72922091	1.00[ASN][1000 genomes]
rs72922096	1.00[ASN][1000 genomes]
rs72922102	1.00[ASN][1000 genomes]
rs72924107	1.00[ASN][1000 genomes]
rs72924109	1.00[ASN][1000 genomes]
rs72924111	1.00[ASN][1000 genomes]
rs72924119	1.00[ASN][1000 genomes]
rs72924120	1.00[ASN][1000 genomes]
rs72924125	1.00[ASN][1000 genomes]
rs72924128	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924140	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924141	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924143	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924145	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924147	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924151	1.00[ASN][1000 genomes]
rs72924153	1.00[ASN][1000 genomes]
rs72924155	1.00[ASN][1000 genomes]
rs72924164	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924166	1.00[ASN][1000 genomes]
rs72924176	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924178	1.00[ASN][1000 genomes]
rs72924187	1.00[ASN][1000 genomes]
rs72924189	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72924196	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72926023	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72926033	0.96[AFR][1000 genomes]
rs72926055	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72926058	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72926059	1.00[ASN][1000 genomes]
rs72926066	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72926067	0.88[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs72926070	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72926073	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72926076	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72926084	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72927912	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72927913	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72927914	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72927916	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72927920	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72927925	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72927931	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73847303	1.00[ASN][1000 genomes]
rs73847310	1.00[ASN][1000 genomes]
rs73847338	1.00[ASN][1000 genomes]
rs73847349	1.00[ASN][1000 genomes]
rs73850029	0.83[ASN][1000 genomes]
rs73850031	0.83[ASN][1000 genomes]
rs73850033	0.83[ASN][1000 genomes]
rs73850038	0.83[ASN][1000 genomes]
rs73850040	0.83[ASN][1000 genomes]
rs73850042	0.83[ASN][1000 genomes]
rs73850043	0.83[ASN][1000 genomes]
rs73850062	1.00[ASN][1000 genomes]
rs73850063	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv522694	chr4:129862073-129994690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129945600-129981800	Weak transcription	Thymus	Thymus
2	chr4:129975600-129977400	ZNF genes & repeats	Fetal Lung	lung
3	chr4:129976000-129978000	ZNF genes & repeats	Liver	Liver
4	chr4:129976200-129977200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:129976200-129977400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:129976200-129977400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:129976200-129977400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:129976200-129977400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr4:129976200-129977600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
10	chr4:129976200-129978000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:129976200-129979000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr4:129976400-129977000	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr4:129976400-129977200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
14	chr4:129976400-129977200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr4:129976400-129977400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:129976400-129977400	ZNF genes & repeats	Fetal Stomach	stomach
17	chr4:129976600-129977000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr4:129976600-129977400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:129976600-129977400	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr4:129976800-129977400	ZNF genes & repeats	Aorta	Aorta
21	chr4:129976800-129977400	ZNF genes & repeats	Gastric	stomach

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