Variant report

Variant	rs17013912
Chromosome Location	chr4:129829182-129829183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs10518540	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11934130	0.83[ASN][1000 genomes]
rs11935616	0.83[ASN][1000 genomes]
rs11936845	0.83[ASN][1000 genomes]
rs11940367	0.83[ASN][1000 genomes]
rs11944075	0.83[ASN][1000 genomes]
rs11944782	0.83[ASN][1000 genomes]
rs11945797	0.83[ASN][1000 genomes]
rs11945943	0.83[ASN][1000 genomes]
rs1446997	0.83[ASN][1000 genomes]
rs1446998	0.83[ASN][1000 genomes]
rs17013784	0.87[YRI][hapmap]
rs17013821	0.88[YRI][hapmap]
rs17013914	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17013921	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17013947	0.86[AFR][1000 genomes]
rs17013948	1.00[ASN][1000 genomes]
rs17013950	1.00[ASN][1000 genomes]
rs17013952	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17013957	1.00[ASN][1000 genomes]
rs17013959	1.00[ASN][1000 genomes]
rs17013962	1.00[ASN][1000 genomes]
rs1807772	0.83[ASN][1000 genomes]
rs2167243	0.83[ASN][1000 genomes]
rs34610325	0.83[ASN][1000 genomes]
rs3765056	0.83[ASN][1000 genomes]
rs4323125	0.83[ASN][1000 genomes]
rs55722445	0.83[ASN][1000 genomes]
rs55726726	1.00[ASN][1000 genomes]
rs55764329	0.83[ASN][1000 genomes]
rs56133600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56736556	0.83[ASN][1000 genomes]
rs56873035	0.83[ASN][1000 genomes]
rs57211895	0.83[ASN][1000 genomes]
rs57821290	0.83[ASN][1000 genomes]
rs58053026	0.83[ASN][1000 genomes]
rs58916388	0.83[ASN][1000 genomes]
rs58952520	0.83[ASN][1000 genomes]
rs59003275	0.83[ASN][1000 genomes]
rs59089843	0.83[ASN][1000 genomes]
rs59443911	0.83[ASN][1000 genomes]
rs60220536	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60404916	0.83[ASN][1000 genomes]
rs60617520	0.83[ASN][1000 genomes]
rs60927243	0.83[ASN][1000 genomes]
rs61177405	0.83[ASN][1000 genomes]
rs61264206	0.83[ASN][1000 genomes]
rs61467458	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61491906	0.83[ASN][1000 genomes]
rs72922045	0.83[ASN][1000 genomes]
rs72922049	0.83[ASN][1000 genomes]
rs72922051	0.83[ASN][1000 genomes]
rs72922052	0.83[ASN][1000 genomes]
rs72922056	0.83[ASN][1000 genomes]
rs72922058	0.83[ASN][1000 genomes]
rs72922062	0.83[ASN][1000 genomes]
rs72922082	0.83[ASN][1000 genomes]
rs72922091	0.83[ASN][1000 genomes]
rs72922096	0.83[ASN][1000 genomes]
rs72922102	0.83[ASN][1000 genomes]
rs72924107	0.83[ASN][1000 genomes]
rs72924109	0.83[ASN][1000 genomes]
rs72924111	0.83[ASN][1000 genomes]
rs72924119	0.83[ASN][1000 genomes]
rs72924120	0.83[ASN][1000 genomes]
rs72924125	0.83[ASN][1000 genomes]
rs72924128	0.83[ASN][1000 genomes]
rs72924140	0.83[ASN][1000 genomes]
rs72924141	0.83[ASN][1000 genomes]
rs72924143	0.83[ASN][1000 genomes]
rs72924145	0.83[ASN][1000 genomes]
rs72924147	0.83[ASN][1000 genomes]
rs72924151	0.83[ASN][1000 genomes]
rs72924153	0.83[ASN][1000 genomes]
rs72924155	0.83[ASN][1000 genomes]
rs72924164	0.83[ASN][1000 genomes]
rs72924166	0.83[ASN][1000 genomes]
rs72924176	0.83[ASN][1000 genomes]
rs72924178	0.83[ASN][1000 genomes]
rs72924187	0.83[ASN][1000 genomes]
rs72924189	0.83[ASN][1000 genomes]
rs72924196	0.83[ASN][1000 genomes]
rs72926023	0.83[ASN][1000 genomes]
rs72926055	0.83[ASN][1000 genomes]
rs72926058	0.83[ASN][1000 genomes]
rs72926059	0.83[ASN][1000 genomes]
rs72926066	0.83[ASN][1000 genomes]
rs72926070	0.83[ASN][1000 genomes]
rs72926073	0.83[ASN][1000 genomes]
rs72926076	0.83[ASN][1000 genomes]
rs72926084	0.83[ASN][1000 genomes]
rs72927912	0.83[ASN][1000 genomes]
rs72927913	0.83[ASN][1000 genomes]
rs72927914	0.83[ASN][1000 genomes]
rs72927916	0.83[ASN][1000 genomes]
rs72927920	0.83[ASN][1000 genomes]
rs72927925	0.83[ASN][1000 genomes]
rs72927931	0.83[ASN][1000 genomes]
rs73847303	0.83[ASN][1000 genomes]
rs73847310	0.83[ASN][1000 genomes]
rs73847338	0.83[ASN][1000 genomes]
rs73847349	0.83[ASN][1000 genomes]
rs73850029	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73850031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73850033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73850038	1.00[ASN][1000 genomes]
rs73850040	1.00[ASN][1000 genomes]
rs73850042	1.00[ASN][1000 genomes]
rs73850043	1.00[ASN][1000 genomes]
rs73850045	0.80[AFR][1000 genomes]
rs73850056	0.88[AFR][1000 genomes]
rs73850058	0.88[AFR][1000 genomes]
rs73850062	0.83[ASN][1000 genomes]
rs73850063	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv517249	chr4:129738328-129927804	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1026938	chr4:129770961-129936205	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1030513	chr4:129770961-129965026	Strong transcription Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv870175	chr4:129771718-129937945	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1026772	chr4:129773881-129936205	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv461637	chr4:129774375-129924977	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv595397	chr4:129774375-129924977	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv461638	chr4:129774375-129927804	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv595398	chr4:129774375-129927804	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv1018994	chr4:129775612-129933968	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv1034996	chr4:129777825-129905255	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv537249	chr4:129777825-129905255	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv1022446	chr4:129778025-129905116	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv537250	chr4:129778025-129905116	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv1030296	chr4:129778025-129920680	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
17	nsv537251	chr4:129778025-129920680	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
18	esv2830419	chr4:129785483-129905256	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
19	nsv533785	chr4:129785683-129857992	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	n/a
20	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
21	nsv1026722	chr4:129801602-129929219	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv537252	chr4:129801602-129929219	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129793800-129907200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:129794200-129829400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:129794400-129860200	Weak transcription	Thymus	Thymus
4	chr4:129798400-129833800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:129810400-129847200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:129810400-129847400	Weak transcription	Fetal Intestine Large	intestine
7	chr4:129810600-129847200	Weak transcription	Dnd41	blood
8	chr4:129810800-129838600	Weak transcription	Primary T cells from cord blood	blood
9	chr4:129811800-129833800	Weak transcription	Primary B cells from cord blood	blood
10	chr4:129812400-129834800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:129821400-129867800	Weak transcription	Fetal Intestine Small	intestine
12	chr4:129827400-129833800	Weak transcription	GM12878-XiMat	blood
13	chr4:129828200-129830200	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr4:129828600-129837400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:129828800-129829800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr4:129829000-129832800	Weak transcription	Monocytes-CD14+_RO01746	blood

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