Variant report

Variant	rs59003275
Chromosome Location	chr4:129965798-129965799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs10518540	0.83[ASN][1000 genomes]
rs11934130	1.00[ASN][1000 genomes]
rs11935616	1.00[ASN][1000 genomes]
rs11936845	1.00[ASN][1000 genomes]
rs11940367	1.00[ASN][1000 genomes]
rs11944075	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11944782	1.00[ASN][1000 genomes]
rs11945797	1.00[ASN][1000 genomes]
rs11945943	1.00[ASN][1000 genomes]
rs1446997	1.00[ASN][1000 genomes]
rs1446998	1.00[ASN][1000 genomes]
rs17013912	0.83[ASN][1000 genomes]
rs17013921	0.83[ASN][1000 genomes]
rs17013948	0.83[ASN][1000 genomes]
rs17013950	0.83[ASN][1000 genomes]
rs17013952	0.83[ASN][1000 genomes]
rs17013957	0.83[ASN][1000 genomes]
rs17013959	0.83[ASN][1000 genomes]
rs17013962	0.83[ASN][1000 genomes]
rs1807772	1.00[ASN][1000 genomes]
rs2167243	1.00[ASN][1000 genomes]
rs34610325	1.00[ASN][1000 genomes]
rs3765056	1.00[ASN][1000 genomes]
rs4323125	1.00[ASN][1000 genomes]
rs55722445	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs55726726	0.83[ASN][1000 genomes]
rs55764329	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs56133600	0.83[ASN][1000 genomes]
rs56736556	1.00[ASN][1000 genomes]
rs56873035	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57211895	1.00[ASN][1000 genomes]
rs57821290	1.00[ASN][1000 genomes]
rs58053026	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58916388	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58952520	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59089843	1.00[ASN][1000 genomes]
rs59443911	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60404916	1.00[ASN][1000 genomes]
rs60617520	1.00[ASN][1000 genomes]
rs60927243	1.00[ASN][1000 genomes]
rs61177405	1.00[ASN][1000 genomes]
rs61264206	1.00[ASN][1000 genomes]
rs61467458	0.83[ASN][1000 genomes]
rs61491906	1.00[ASN][1000 genomes]
rs72922045	1.00[ASN][1000 genomes]
rs72922049	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72922051	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72922052	1.00[ASN][1000 genomes]
rs72922056	1.00[ASN][1000 genomes]
rs72922058	1.00[ASN][1000 genomes]
rs72922062	1.00[ASN][1000 genomes]
rs72922082	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72922083	0.86[ASN][1000 genomes]
rs72922091	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72922096	1.00[ASN][1000 genomes]
rs72922102	1.00[ASN][1000 genomes]
rs72924107	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924109	1.00[ASN][1000 genomes]
rs72924111	1.00[ASN][1000 genomes]
rs72924119	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924120	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924125	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924128	1.00[ASN][1000 genomes]
rs72924140	1.00[ASN][1000 genomes]
rs72924141	1.00[ASN][1000 genomes]
rs72924143	1.00[ASN][1000 genomes]
rs72924145	1.00[ASN][1000 genomes]
rs72924147	1.00[ASN][1000 genomes]
rs72924151	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924153	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924155	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924164	1.00[ASN][1000 genomes]
rs72924166	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924176	1.00[ASN][1000 genomes]
rs72924178	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924187	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72924189	1.00[ASN][1000 genomes]
rs72924196	1.00[ASN][1000 genomes]
rs72926023	1.00[ASN][1000 genomes]
rs72926055	1.00[ASN][1000 genomes]
rs72926058	1.00[ASN][1000 genomes]
rs72926059	1.00[ASN][1000 genomes]
rs72926066	1.00[ASN][1000 genomes]
rs72926067	0.86[ASN][1000 genomes]
rs72926070	1.00[ASN][1000 genomes]
rs72926073	1.00[ASN][1000 genomes]
rs72926076	1.00[ASN][1000 genomes]
rs72926084	1.00[ASN][1000 genomes]
rs72927912	1.00[ASN][1000 genomes]
rs72927913	1.00[ASN][1000 genomes]
rs72927914	1.00[ASN][1000 genomes]
rs72927916	1.00[ASN][1000 genomes]
rs72927920	1.00[ASN][1000 genomes]
rs72927925	1.00[ASN][1000 genomes]
rs72927931	1.00[ASN][1000 genomes]
rs73847303	1.00[ASN][1000 genomes]
rs73847310	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73847338	1.00[ASN][1000 genomes]
rs73847349	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73850029	0.83[ASN][1000 genomes]
rs73850031	0.83[ASN][1000 genomes]
rs73850033	0.83[ASN][1000 genomes]
rs73850038	0.83[ASN][1000 genomes]
rs73850040	0.83[ASN][1000 genomes]
rs73850042	0.83[ASN][1000 genomes]
rs73850043	0.83[ASN][1000 genomes]
rs73850062	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73850063	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv522694	chr4:129862073-129994690	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv879931	chr4:129939775-130178102	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129945600-129981800	Weak transcription	Thymus	Thymus
2	chr4:129951200-129967200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:129951400-129976200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:129958800-129966400	Weak transcription	Fetal Thymus	thymus
5	chr4:129959800-129966000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:129961400-129967800	Weak transcription	HSMM	muscle
7	chr4:129964400-129966400	Weak transcription	Monocytes-CD14+_RO01746	blood

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