Variant report

Variant rs11956042
Chromosome Location chr5:118665801-118665802
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:118658200-118670400 Weak transcription Lung lung
2 chr5:118659600-118677800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr5:118660200-118666600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr5:118660200-118675600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr5:118660200-118678600 Weak transcription HepG2 liver
6 chr5:118660400-118666000 Enhancers Adipose Nuclei Adipose
7 chr5:118660400-118668600 Enhancers Primary hematopoietic stem cells blood
8 chr5:118660400-118670400 Weak transcription Right Atrium heart
9 chr5:118661000-118666200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr5:118661800-118667000 Enhancers Fetal Heart heart
11 chr5:118662200-118666200 Weak transcription Left Ventricle heart
12 chr5:118662200-118667200 Weak transcription HMEC breast
13 chr5:118662600-118666600 Enhancers Fetal Stomach stomach
14 chr5:118662600-118667000 Genic enhancers Fetal Thymus thymus
15 chr5:118662600-118669000 Enhancers Primary Natural Killer cells fromperipheralblood blood
16 chr5:118662600-118670400 Weak transcription Right Ventricle heart
17 chr5:118662800-118668800 Enhancers Primary T cells fromperipheralblood blood
18 chr5:118663000-118667200 Weak transcription Spleen Spleen
19 chr5:118663000-118669600 Enhancers Primary hematopoietic stem cells short term culture blood
20 chr5:118663200-118666200 Weak transcription Monocytes-CD14+_RO01746 blood
21 chr5:118663200-118666400 Weak transcription Primary monocytes fromperipheralblood blood
22 chr5:118663400-118667600 Enhancers Fetal Adrenal Gland Adrenal Gland
23 chr5:118663600-118666600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
24 chr5:118663600-118668600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr5:118663800-118666000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
26 chr5:118663800-118666000 Enhancers Rectal Mucosa Donor 29 rectum
27 chr5:118663800-118666400 Enhancers Fetal Lung lung
28 chr5:118663800-118666600 Enhancers Duodenum Smooth Muscle Duodenum
29 chr5:118663800-118667200 Enhancers Colon Smooth Muscle Colon
30 chr5:118663800-118667600 Enhancers Duodenum Mucosa Duodenum
31 chr5:118663800-118669200 Flanking Active TSS Primary T helper cells PMA-I stimulated --
32 chr5:118664000-118666200 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
33 chr5:118664000-118666400 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr5:118664000-118666600 Enhancers Rectal Smooth Muscle rectum
35 chr5:118664000-118667400 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
36 chr5:118664000-118667600 Enhancers Sigmoid Colon Sigmoid Colon
37 chr5:118664000-118668800 Enhancers Primary mononuclear cells fromperipheralblood Blood
38 chr5:118664200-118666400 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
39 chr5:118664200-118667600 Enhancers Placenta Placenta
40 chr5:118664200-118668400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr5:118664200-118671600 Weak transcription Small Intestine intestine
42 chr5:118664200-118673400 Enhancers Primary neutrophils fromperipheralblood blood
43 chr5:118664400-118678200 Weak transcription Fetal Kidney kidney
44 chr5:118664600-118666200 Flanking Active TSS Stomach Smooth Muscle stomach
45 chr5:118664600-118666600 Transcr. at gene 5' and 3' Primary T cells from cord blood blood
46 chr5:118664600-118669200 Enhancers Colonic Mucosa Colon
47 chr5:118664800-118668800 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
48 chr5:118664800-118670600 Weak transcription Skeletal Muscle Female skeletal muscle
49 chr5:118664800-118673000 Weak transcription HSMM muscle
50 chr5:118665000-118666600 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood

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