The 2.0 version of rSNPBase

Variant report

Variant rs72786161
Chromosome Location chr5:118670540-118670541
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:118659600-118677800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
2 chr5:118660200-118675600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr5:118660200-118678600 Weak transcription HepG2 liver
4 chr5:118664200-118671600 Weak transcription Small Intestine intestine
5 chr5:118664200-118673400 Enhancers Primary neutrophils fromperipheralblood blood
6 chr5:118664400-118678200 Weak transcription Fetal Kidney kidney
7 chr5:118664800-118670600 Weak transcription Skeletal Muscle Female skeletal muscle
8 chr5:118664800-118673000 Weak transcription HSMM muscle
9 chr5:118665000-118670600 Weak transcription Placenta Amnion Placenta Amnion
10 chr5:118665000-118672600 Weak transcription Hela-S3 cervix
11 chr5:118665400-118670600 Weak transcription HUES6 Cell Line embryonic stem cell
12 chr5:118665400-118670600 Weak transcription NHLF lung
13 chr5:118665400-118677000 Weak transcription iPS-20b Cell Line embryonic stem cell
14 chr5:118665600-118670600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
15 chr5:118665800-118670600 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr5:118665800-118672600 Weak transcription Fetal Intestine Small intestine
17 chr5:118665800-118673200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr5:118666200-118672200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:118666600-118672600 Weak transcription Fetal Stomach stomach
20 chr5:118666800-118671000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr5:118667600-118671200 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr5:118667600-118671800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr5:118667600-118673000 Weak transcription Gastric stomach
24 chr5:118668000-118672200 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
25 chr5:118668200-118671200 Flanking Active TSS Primary T cells from cord blood blood
26 chr5:118668400-118670800 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
27 chr5:118668400-118671800 Flanking Active TSS NHEK skin
28 chr5:118668400-118672200 Flanking Active TSS Primary T helper cells fromperipheralblood blood
29 chr5:118668600-118670600 Active TSS GM12878-XiMat blood
30 chr5:118668600-118671000 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr5:118668600-118671600 Active TSS Rectal Mucosa Donor 29 rectum
32 chr5:118668600-118672000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr5:118668800-118671200 Active TSS Duodenum Mucosa Duodenum
34 chr5:118669000-118670800 Active TSS Primary T helper 17 cells PMA-I stimulated --
35 chr5:118669000-118671600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
36 chr5:118669200-118671200 Enhancers Primary hematopoietic stem cells blood
37 chr5:118669200-118675600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
38 chr5:118669400-118671600 Weak transcription Monocytes-CD14+_RO01746 blood
39 chr5:118669400-118677600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
40 chr5:118669600-118670600 Weak transcription Primary hematopoietic stem cells short term culture blood
41 chr5:118669600-118670800 Weak transcription Primary monocytes fromperipheralblood blood
42 chr5:118669600-118672400 Weak transcription Duodenum Smooth Muscle Duodenum
43 chr5:118669600-118672600 Weak transcription Rectal Mucosa Donor 31 rectum
44 chr5:118669600-118673600 Genic enhancers Fetal Thymus thymus
45 chr5:118669800-118672800 Enhancers Fetal Heart heart
46 chr5:118670000-118672400 Enhancers K562 blood
47 chr5:118670000-118672600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr5:118670000-118675200 Enhancers Dnd41 blood
49 chr5:118670200-118670600 Enhancers Primary Natural Killer cells fromperipheralblood blood
50 chr5:118670200-118670600 Enhancers Stomach Mucosa stomach

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Last update: Aug 31, 2015