The 2.0 version of rSNPBase

Variant report

Variant rs6860034
Chromosome Location chr5:118689760-118689761
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:89 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:118670800-118691000 Weak transcription Aorta Aorta
2 chr5:118671200-118695400 Weak transcription A549 lung
3 chr5:118676800-118691400 Weak transcription Lung lung
4 chr5:118678000-118690600 Weak transcription NHEK skin
5 chr5:118679000-118690600 Weak transcription Fetal Intestine Small intestine
6 chr5:118679000-118690800 Weak transcription Rectal Smooth Muscle rectum
7 chr5:118680200-118690400 Weak transcription Stomach Mucosa stomach
8 chr5:118680200-118690600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr5:118680200-118690600 Weak transcription Colonic Mucosa Colon
10 chr5:118680400-118690600 Enhancers Primary T helper naive cells fromperipheralblood blood
11 chr5:118680800-118691000 Weak transcription HSMMtube muscle
12 chr5:118682600-118690600 Weak transcription Thymus Thymus
13 chr5:118682600-118693600 Weak transcription Dnd41 blood
14 chr5:118683800-118689800 Weak transcription Primary hematopoietic stem cells blood
15 chr5:118683800-118689800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr5:118684000-118690600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr5:118684000-118690800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr5:118684000-118691000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr5:118684000-118691000 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr5:118684000-118692800 Weak transcription K562 blood
21 chr5:118684200-118690400 Weak transcription Hela-S3 cervix
22 chr5:118684200-118691000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr5:118685000-118691000 Weak transcription Sigmoid Colon Sigmoid Colon
24 chr5:118685400-118690800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr5:118687200-118690800 Enhancers ES-I3 Cell Line embryonic stem cell
26 chr5:118687800-118690200 Flanking Active TSS GM12878-XiMat blood
27 chr5:118687800-118690400 Enhancers HUES48 Cell Line embryonic stem cell
28 chr5:118687800-118691000 Enhancers H1 Cell Line embryonic stem cell
29 chr5:118687800-118691000 Enhancers Primary T killer naive cells fromperipheralblood blood
30 chr5:118688000-118689800 Enhancers ES-WA7 Cell Line embryonic stem cell
31 chr5:118688000-118690400 Enhancers HUES64 Cell Line embryonic stem cell
32 chr5:118688000-118691000 Enhancers iPS-15b Cell Line embryonic stem cell
33 chr5:118688200-118690400 Enhancers Primary T cells from cord blood blood
34 chr5:118688200-118690800 Enhancers HUES6 Cell Line embryonic stem cell
35 chr5:118688600-118690000 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr5:118688600-118691200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
37 chr5:118688800-118690600 Enhancers Primary mononuclear cells fromperipheralblood Blood
38 chr5:118688800-118690600 Enhancers Fetal Kidney kidney
39 chr5:118688800-118691000 Enhancers Adipose Nuclei Adipose
40 chr5:118688800-118691400 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
41 chr5:118689000-118689800 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
42 chr5:118689000-118689800 Enhancers Spleen Spleen
43 chr5:118689000-118690000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
44 chr5:118689000-118690000 Enhancers Gastric stomach
45 chr5:118689000-118690200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr5:118689000-118690600 Enhancers Primary Natural Killer cells fromperipheralblood blood
47 chr5:118689000-118690800 Enhancers Duodenum Smooth Muscle Duodenum
48 chr5:118689000-118691000 Enhancers Primary monocytes fromperipheralblood blood
49 chr5:118689000-118691000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr5:118689000-118691000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015