The 2.0 version of rSNPBase

Variant report

Variant rs6862941
Chromosome Location chr5:118693056-118693057
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:118671200-118695400 Weak transcription A549 lung
2 chr5:118682600-118693600 Weak transcription Dnd41 blood
3 chr5:118690600-118693200 Flanking Active TSS Primary T helper cells fromperipheralblood blood
4 chr5:118690600-118693400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
5 chr5:118690600-118700400 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
6 chr5:118690800-118693800 Active TSS Rectal Smooth Muscle rectum
7 chr5:118691000-118693400 Active TSS HSMMtube muscle
8 chr5:118691200-118693200 Active TSS Left Ventricle heart
9 chr5:118691200-118693200 Active TSS Right Atrium heart
10 chr5:118691200-118693400 Active TSS Pancreatic Islets Pancreatic Islet
11 chr5:118691200-118694200 Active TSS Duodenum Smooth Muscle Duodenum
12 chr5:118691200-118694200 Active TSS GM12878-XiMat blood
13 chr5:118691400-118693200 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr5:118691400-118693200 Active TSS Primary B cells from peripheral blood blood
15 chr5:118691400-118693200 Active TSS Colonic Mucosa Colon
16 chr5:118691400-118693200 Active TSS Duodenum Mucosa Duodenum
17 chr5:118691400-118693400 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr5:118691400-118693400 Active TSS NHDF-Ad bronchial
19 chr5:118691400-118693400 Active TSS NHLF lung
20 chr5:118691400-118693800 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
21 chr5:118691400-118694400 Active TSS Rectal Mucosa Donor 29 rectum
22 chr5:118691400-118694400 Active TSS Stomach Smooth Muscle stomach
23 chr5:118691800-118693400 Flanking Active TSS Primary T cells fromperipheralblood blood
24 chr5:118691800-118693400 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
25 chr5:118691800-118695400 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
26 chr5:118691800-118700400 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
27 chr5:118692000-118693400 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
28 chr5:118692000-118693400 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
29 chr5:118692000-118693400 Flanking Active TSS HMEC breast
30 chr5:118692000-118693800 Weak transcription ES-WA7 Cell Line embryonic stem cell
31 chr5:118692000-118707200 Enhancers Primary T killer naive cells fromperipheralblood blood
32 chr5:118692200-118694400 Weak transcription Pancreas Pancrea
33 chr5:118692200-118694400 Weak transcription Spleen Spleen
34 chr5:118692200-118694600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr5:118692200-118696800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr5:118692400-118693200 Flanking Active TSS Cortex derived primary cultured neurospheres brain
37 chr5:118692400-118693200 Flanking Active TSS NH-A brain
38 chr5:118692400-118693400 Active TSS Primary Natural Killer cells fromperipheralblood blood
39 chr5:118692400-118693400 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
40 chr5:118692400-118693400 Flanking Active TSS Adipose Nuclei Adipose
41 chr5:118692400-118693400 Flanking Active TSS Fetal Lung lung
42 chr5:118692400-118694400 Flanking Active TSS Primary B cells from cord blood blood
43 chr5:118692400-118694400 Weak transcription Esophagus oesophagus
44 chr5:118692400-118694800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr5:118692400-118695000 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
46 chr5:118692400-118695200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
47 chr5:118692400-118696200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr5:118692600-118693200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
49 chr5:118692600-118693200 Bivalent Enhancer hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr5:118692600-118693200 Bivalent Enhancer hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015